Miyakogusa Predicted Gene
- Lj3g3v3639960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3639960.1 Non Characterized Hit- tr|I1LP24|I1LP24_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13503
PE,88.43,0,sigma70-ECF: RNA polymerase sigma factor, sigma-70,RNA
polymerase sigma-70; no description,NULL; no ,CUFF.46126.1
(337 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr0172s0030.1 | RNA polymerase sigma factor | HC | scaffold01... 607 e-174
Medtr0172s0030.2 | RNA polymerase sigma factor | HC | scaffold01... 607 e-174
Medtr3g033420.1 | RNA polymerase sigma factor | HC | chr3:106852... 155 4e-38
Medtr3g118290.1 | RNA polymerase sigma factor | HC | chr3:553778... 149 5e-36
Medtr7g101840.1 | RNA polymerase sigma factor | HC | chr7:410664... 137 1e-32
Medtr1g063850.1 | RNA polymerase sigma factor | HC | chr1:280302... 137 2e-32
Medtr1g007370.1 | RNA polymerase sigma factor | HC | chr1:310765... 107 1e-23
Medtr3g090900.1 | RNA polymerase sigma factor | HC | chr3:412740... 93 4e-19
Medtr3g090900.2 | RNA polymerase sigma factor | HC | chr3:412740... 81 1e-15
Medtr1g007370.2 | RNA polymerase sigma factor | HC | chr1:310765... 80 4e-15
Medtr3g033150.1 | RNA polymerase sigma factor | HC | chr3:105390... 72 1e-12
Medtr3g090900.3 | RNA polymerase sigma factor | HC | chr3:412740... 72 1e-12
>Medtr0172s0030.1 | RNA polymerase sigma factor | HC |
scaffold0172:25315-21123 | 20130731
Length = 504
Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/331 (88%), Positives = 314/331 (94%)
Query: 7 MQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGC 66
MQ+RS ISPEL+QNR KGYVKGVV ++LLSHAEVVKLSEKIK GLSLDEHKSRLKE+LG
Sbjct: 174 MQLRSTISPELIQNRLKGYVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGS 233
Query: 67 EPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQG 126
EPSDDQ+A SLKISR++LRAK IEC+LARE+L MSNVRLV+SIAQRYDNMGAEM DLVQG
Sbjct: 234 EPSDDQVATSLKISRADLRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQG 293
Query: 127 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAK 186
GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIR A+
Sbjct: 294 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAE 353
Query: 187 FRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIA 246
++LEERGITPTIDRIAKSLNMSQ+KVRNATEA SKVFSLDREAFPSLNGLPGDTHH +IA
Sbjct: 354 YKLEERGITPTIDRIAKSLNMSQRKVRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIA 413
Query: 247 DNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLS 306
D + ENIPW+ VDEW LK+EVN+LIN+TLVEREREIIRLYYGLDKECLTWEDISKRIGLS
Sbjct: 414 DKQNENIPWNVVDEWALKEEVNRLINLTLVEREREIIRLYYGLDKECLTWEDISKRIGLS 473
Query: 307 RERVRQVGLVALEKLKHAARKREMEAMLLKH 337
RERVRQVGLVALEKLKHAARKREMEAMLLK+
Sbjct: 474 RERVRQVGLVALEKLKHAARKREMEAMLLKY 504
>Medtr0172s0030.2 | RNA polymerase sigma factor | HC |
scaffold0172:25892-20750 | 20130731
Length = 504
Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/331 (88%), Positives = 314/331 (94%)
Query: 7 MQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGC 66
MQ+RS ISPEL+QNR KGYVKGVV ++LLSHAEVVKLSEKIK GLSLDEHKSRLKE+LG
Sbjct: 174 MQLRSTISPELIQNRLKGYVKGVVCDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGS 233
Query: 67 EPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQG 126
EPSDDQ+A SLKISR++LRAK IEC+LARE+L MSNVRLV+SIAQRYDNMGAEM DLVQG
Sbjct: 234 EPSDDQVATSLKISRADLRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQG 293
Query: 127 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAK 186
GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIR A+
Sbjct: 294 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAE 353
Query: 187 FRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIA 246
++LEERGITPTIDRIAKSLNMSQ+KVRNATEA SKVFSLDREAFPSLNGLPGDTHH +IA
Sbjct: 354 YKLEERGITPTIDRIAKSLNMSQRKVRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIA 413
Query: 247 DNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLS 306
D + ENIPW+ VDEW LK+EVN+LIN+TLVEREREIIRLYYGLDKECLTWEDISKRIGLS
Sbjct: 414 DKQNENIPWNVVDEWALKEEVNRLINLTLVEREREIIRLYYGLDKECLTWEDISKRIGLS 473
Query: 307 RERVRQVGLVALEKLKHAARKREMEAMLLKH 337
RERVRQVGLVALEKLKHAARKREMEAMLLK+
Sbjct: 474 RERVRQVGLVALEKLKHAARKREMEAMLLKY 504
>Medtr3g033420.1 | RNA polymerase sigma factor | HC |
chr3:10685299-10683200 | 20130731
Length = 403
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 23/305 (7%)
Query: 26 VKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELR 85
V G V+ LS + +L +K G ++ K R+ E+ G + ISR L
Sbjct: 103 VVGSVTSGFLSSTDEAELCLCLKEGAKIEVAKQRMTEQEG----------NSAISRFTLE 152
Query: 86 AKTIECTL-----ARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDS 140
+++ L ++ERLA LV SIA Y G + DL+Q G IGLL G EKFD
Sbjct: 153 NTSVDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDP 212
Query: 141 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA-KFRLEERGITPTID 199
++G K+STYVYWWI+QG+ +AL + SR +RLP + ++ I A PT +
Sbjct: 213 NRGCKLSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYN 272
Query: 200 RIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVD 259
IA+ LN++ V+ +E + SLDR N + + I +E IP V+
Sbjct: 273 EIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLILKE-----IIPGPVEMIPEKMVE 327
Query: 260 EWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVAL 318
+K V KL+N TL +RE EI+RLY+GL+ E L++E+I K + LSRER+RQ+ +AL
Sbjct: 328 RQLMKQGVVKLLN-TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIAL 386
Query: 319 EKLKH 323
KL+
Sbjct: 387 SKLEQ 391
>Medtr3g118290.1 | RNA polymerase sigma factor | HC |
chr3:55377817-55374030 | 20130731
Length = 572
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 168/304 (55%), Gaps = 16/304 (5%)
Query: 38 AEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARER 97
+E +K SE I+ + L++ + L EK G +P+ Q A + + LR + +E+
Sbjct: 278 SEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 337
Query: 98 LAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQG 157
+ SN+RLV+S+A+ Y G + DLVQ G GL+RG EK+D+SKGFK STY +WWI+Q
Sbjct: 338 MIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQA 397
Query: 158 VSRALVENSRTLRLPTHLHERLSLIRTAKFRL-EERGITPTIDRIAKSLNMSQKKVRNAT 216
V ++L SRT+RLP H+ ++ A+ +L E G P + +A++ +S K+
Sbjct: 398 VRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKR----- 452
Query: 217 EAISKVFSLDREAFPSLNGLPGDTHHC----YIADNRLENIPWHGVDEWTLKDEVNKLIN 272
+S V L +A SL G +AD E + ++ KD + K+++
Sbjct: 453 --LSAVL-LTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKD-LEKVLD 508
Query: 273 VTLVEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKREME 331
+L RE+++I+ +G+D + T ++I + +G+SRER+RQ+ A KLK+ R + ++
Sbjct: 509 -SLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQ 567
Query: 332 AMLL 335
+
Sbjct: 568 QYFV 571
>Medtr7g101840.1 | RNA polymerase sigma factor | HC |
chr7:41066429-41071150 | 20130731
Length = 557
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 173/309 (55%), Gaps = 14/309 (4%)
Query: 31 SEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIE 90
++QLLS E +L +I+ L E K +L+ G EP+ + A + +S +L+ K +
Sbjct: 254 TKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQ-KRLH 312
Query: 91 C-TLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTY 149
C ++++L +N+RLV+ IA+ Y G + DL+Q G +GL+R +EKF G + STY
Sbjct: 313 CGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFSTY 372
Query: 150 VYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTA-KFRLEERGITPTIDRIAKSLNMS 208
YWWIRQ + RAL +S+T+RLP + + L I A K ++E + PT + IAK + ++
Sbjct: 373 AYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGIT 432
Query: 209 QKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVN 268
++ + S++R + + T AD+ +E IP V + ++ V
Sbjct: 433 VDRLEMLLFSTRTPLSMERAVWADSDT----TFQEITADSSIE-IPNVCVAKQLMRSHVR 487
Query: 269 KLINVTLVEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 325
L+ + L +ER+++RL +G++ ++ LT +I K +G+ +ERVRQ+ AL KLK
Sbjct: 488 NLLGI-LPPKERKVLRLRFGIEDGYEKSLT--EIGKVLGVCKERVRQLESQALNKLKQCL 544
Query: 326 RKREMEAML 334
++++A +
Sbjct: 545 VSQQLDAYV 553
>Medtr1g063850.1 | RNA polymerase sigma factor | HC |
chr1:28030240-28023352 | 20130731
Length = 561
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 169/303 (55%), Gaps = 14/303 (4%)
Query: 25 YVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSEL 84
+++ S+QLL+ + +L +I+ L L++ K+ L+ + G EP+ + A ++ ++
Sbjct: 252 FLQSPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKM 311
Query: 85 RAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGF 144
+A+ +RE+L +N+RLV IA+ Y G + DL+Q G GL++ I+KF + G
Sbjct: 312 KAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGC 371
Query: 145 KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERG-ITPTIDRIAK 203
+ ++Y YWWI+Q + +A+ +SRT+RLP ++ +LS + AK +E G + PT + +A+
Sbjct: 372 RFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKKLYKEEGNLNPTKEELAR 431
Query: 204 SLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCY---IADNRLENIPWHGVDE 260
+ +S KV ++ + R N + +T + AD +E+ P V +
Sbjct: 432 RVGISPDKV-------DRLLFVARIPISMQNTVGSETDTTFQEITADCAIES-PNMSVAK 483
Query: 261 WTLKDEVNKLINVTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALE 319
++ V ++N+ L +ER IIRL +G D E + +I + GLSRERVRQ+ AL
Sbjct: 484 QLMRRHVLNVLNI-LRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRERVRQLESRALY 542
Query: 320 KLK 322
KLK
Sbjct: 543 KLK 545
>Medtr1g007370.1 | RNA polymerase sigma factor | HC |
chr1:310765-306478 | 20130731
Length = 549
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 155/286 (54%), Gaps = 15/286 (5%)
Query: 41 VKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAM 100
V++S+ +KV L++ ++ ++E S A + + L+ + R+ L
Sbjct: 263 VEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIR 322
Query: 101 SNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 160
S LV+ A++Y MG + DL+Q G IG+L+G E+FDS+KG++ STYV +WIR+ +SR
Sbjct: 323 STRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSR 382
Query: 161 ALVENSRTLRLPTHLHERLSLIRTAKFRLEERGIT-PTIDRIAKSLNMSQKKVRNATEAI 219
+ + +R + +P +++ +S I+ A+ L+ + P IAK +S K+ +A+ +
Sbjct: 383 MVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCL 442
Query: 220 SKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVERE 279
V S+ R G + ++ D +E+ P V + +K +++ ++ +L RE
Sbjct: 443 RTVSSMYR----------GIEYMGHMPDLSIES-PEETVMKQHIKKDIHDILQ-SLDSRE 490
Query: 280 REIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 323
R+II L +GL D + + E I K +S+E +R++ AL KL++
Sbjct: 491 RQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKALTKLRN 536
>Medtr3g090900.1 | RNA polymerase sigma factor | HC |
chr3:41274049-41279255 | 20130731
Length = 514
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 153/299 (51%), Gaps = 24/299 (8%)
Query: 37 HAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIEC-TLAR 95
HA + KL + +K L + K L+++L EP++D+IA + + ++++ K IE AR
Sbjct: 222 HAFLFKLMQPMKALLQV---KDDLQKELEREPTEDEIADATNMHTTQVK-KAIEVGRAAR 277
Query: 96 ERLAMSNVRLVMSIAQRYDNMGAE---MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+L N+RLV+ + RY + A DL Q G+ GL+ I++F+ ++ F++STY +
Sbjct: 278 NKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLF 337
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLSLIRTAK----FRLEERGITPTIDRIAKSLNMS 208
WIR + R++ S + R+P L + IR AK F+L+ +PT + I + +++S
Sbjct: 338 WIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQR---SPTEEEIIEKVHVS 393
Query: 209 QKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVN 268
++ R+ +A + SL + D P + L D ++
Sbjct: 394 PERYRDVMKASKPLLSLHSRHLTTQEEFINGVVDDGGVDGDNRRQP--ALLRLALDDVLD 451
Query: 269 KLINVTLVEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 326
+L +E +IR +GLD K T +I+ + +SRE VR+ + AL KLKH+AR
Sbjct: 452 -----SLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKHSAR 505
>Medtr3g090900.2 | RNA polymerase sigma factor | HC |
chr3:41274049-41279255 | 20130731
Length = 459
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 109/194 (56%), Gaps = 10/194 (5%)
Query: 37 HAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIEC-TLAR 95
HA + KL + +K L + K L+++L EP++D+IA + + ++++ K IE AR
Sbjct: 222 HAFLFKLMQPMKALLQV---KDDLQKELEREPTEDEIADATNMHTTQVK-KAIEVGRAAR 277
Query: 96 ERLAMSNVRLVMSIAQRYDNMGAE---MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+L N+RLV+ + RY + A DL Q G+ GL+ I++F+ ++ F++STY +
Sbjct: 278 NKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLF 337
Query: 153 WIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLE-ERGITPTIDRIAKSLNMSQKK 211
WIR + R++ S + R+P L + IR AK L + +PT + I + +++S ++
Sbjct: 338 WIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSPER 396
Query: 212 VRNATEAISKVFSL 225
R+ +A + SL
Sbjct: 397 YRDVMKASKPLLSL 410
>Medtr1g007370.2 | RNA polymerase sigma factor | HC |
chr1:310765-306479 | 20130731
Length = 400
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 77/132 (58%)
Query: 41 VKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAM 100
V++S+ +KV L++ ++ ++E S A + + L+ + R+ L
Sbjct: 263 VEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIR 322
Query: 101 SNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSR 160
S LV+ A++Y MG + DL+Q G IG+L+G E+FDS+KG++ STYV +WIR+ +SR
Sbjct: 323 STRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSR 382
Query: 161 ALVENSRTLRLP 172
+ + +R + +P
Sbjct: 383 MVAKYARGITVP 394
>Medtr3g033150.1 | RNA polymerase sigma factor | HC |
chr3:10539070-10538516 | 20130731
Length = 154
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 7/129 (5%)
Query: 196 PTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPW 255
PT + IA+ LN++ V+ +E + SLDR N + + I +E IP
Sbjct: 20 PTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLILKE-----IIPGPVEMIPE 74
Query: 256 HGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVG 314
V+ +K V KL+N TL +RE EI+RLY+GL+ E L++E+I K + LSRER+RQ+
Sbjct: 75 KMVERQLMKQGVVKLLN-TLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIH 133
Query: 315 LVALEKLKH 323
+AL KL+
Sbjct: 134 GIALSKLRQ 142
>Medtr3g090900.3 | RNA polymerase sigma factor | HC |
chr3:41274049-41279196 | 20130731
Length = 403
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 77/131 (58%), Gaps = 8/131 (6%)
Query: 37 HAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECT-LAR 95
HA + KL + +K L + K L+++L EP++D+IA + + ++++ K IE AR
Sbjct: 222 HAFLFKLMQPMKALLQV---KDDLQKELEREPTEDEIADATNMHTTQVK-KAIEVGRAAR 277
Query: 96 ERLAMSNVRLVMSIAQRYDNMGAE---MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 152
+L N+RLV+ + RY + A DL Q G+ GL+ I++F+ ++ F++STY +
Sbjct: 278 NKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLF 337
Query: 153 WIRQGVSRALV 163
WIR + R++
Sbjct: 338 WIRHAIIRSMT 348