Miyakogusa Predicted Gene

Lj3g3v3639840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639840.1 Non Characterized Hit- tr|I1LP37|I1LP37_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,65.5,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; ORIGIN RECOGNITION COMPLEX SUBUNIT 3,Origin
recognition complex,,CUFF.46105.1
         (735 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g082610.1 | origin recognition complex subunit 3 | HC | ch...  1101   0.0  

>Medtr5g082610.1 | origin recognition complex subunit 3 | HC |
           chr5:35537717-35525611 | 20130731
          Length = 726

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/725 (75%), Positives = 600/725 (82%), Gaps = 11/725 (1%)

Query: 11  LGATPAERDLQPFFVLHKASTGRKDRTSNGQGKLRKRNEPSSSSPKCGKKLEGSMSEGGD 70
           L +T  E DLQPFFVLHKAS  RKDRTS GQGK RKRN+ S   P   KK E S  E  D
Sbjct: 13  LSSTATENDLQPFFVLHKASPRRKDRTSAGQGKSRKRNKLSPRLPHSAKKQEESTDEECD 72

Query: 71  RLLFEQQQVEAFDIVWAKIESTIKDVLRDQNASVFNNIQQWVLECFNATRLLGEPSIAEA 130
           R L +QQQ+EAFDIVW KIESTIKDVLR+ NASVFN IQ+WV ECFN TRL+GEPSI+ A
Sbjct: 73  RYLCQQQQIEAFDIVWTKIESTIKDVLRELNASVFNIIQKWVQECFNTTRLVGEPSISVA 132

Query: 131 TRSFPVLNNTTPGQLFTALVITRNMEFVDDILTFEELSHCLKSHGCHVAMLSSLEFSLKN 190
           TRSFPVL+NTTPG+L++ALV+TRN+EFVDDI+TFEEL   LKSHGCHVAMLSS+EFSLKN
Sbjct: 133 TRSFPVLSNTTPGKLYSALVVTRNIEFVDDIMTFEELGIFLKSHGCHVAMLSSMEFSLKN 192

Query: 191 GIAGCLKALLREFLGCAIDTADISILASWYREQDSYNKPLVLIINDLERCCGSVLTDFIL 250
           GIAGCLKALLREFLG + D ADIS LASWYREQ++YNKPLVLI+NDLERCCGSVLT+FIL
Sbjct: 193 GIAGCLKALLREFLGNSFDPADISALASWYREQENYNKPLVLIVNDLERCCGSVLTEFIL 252

Query: 251 MLSEWVVKVPIILIFGVATTVDAPRNILPSHALEHLCLSKFMLGAPAERMDAIVEAVLVK 310
           MLSEWV+KVPI LIFGVATTVDAPRNI PSHALE  C S FML  PAERMDAIVEA+LVK
Sbjct: 253 MLSEWVIKVPIFLIFGVATTVDAPRNIFPSHALECFCPSMFMLVTPAERMDAIVEAILVK 312

Query: 311 HCTTFNIGYKVALFLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLIHGQILAEDQKE 370
           HCTTFNIG+KVA  LRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLI G+IL EDQ E
Sbjct: 313 HCTTFNIGHKVAQLLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLIQGRILVEDQ-E 371

Query: 371 GKSAFLPETMLKYMDELPSYARNQMDDQTKESMAKGLSELVTVQKLWSTVVLCLYEAGKY 430
           G S   PET+LK M ELPS+ARN M DQT ESMA+GLSELVTVQKLWSTVVLCLYEAGKY
Sbjct: 372 GSSGLSPETLLKCMHELPSHARNIMVDQTNESMAEGLSELVTVQKLWSTVVLCLYEAGKY 431

Query: 431 SKVQLLDLLCEALNKDLYPLRDSSCQEGDEKDNGVSLTNEPCQQYSIMQSNGFICQIGRK 490
           S+VQLLDL CE+LN  LYP RDS     DEKD+G+S TN+P QQYSIMQS G ICQI R+
Sbjct: 432 SRVQLLDLFCESLNHVLYPSRDSVM--SDEKDHGLSSTNDPFQQYSIMQSGGLICQIARR 489

Query: 491 VRDLPTGMLYRLIESWEKLTADIPEIHQKLKKLQSSVAREGGKSPRKSSKDISKRYTSRV 550
           VRDLP G L +LIESW+K+TADI EIH+KLK LQSSV  + GKS R+SSKDI+KR     
Sbjct: 490 VRDLPPGKLDQLIESWDKITADISEIHEKLKILQSSVRCQDGKSSRRSSKDINKR----- 544

Query: 551 SVNTDKDSRTLNSQAGTFLDYLIRNFLRPIEGMPFHEFFCFKNVEKLQLVLNGDPRKRIQ 610
               DKDSR  N QA  FLD L+RN+LRPIEGMPF+E FCFKNVEKLQ VL GDPR+RIQ
Sbjct: 545 ---CDKDSRMSNLQAIAFLDDLVRNYLRPIEGMPFNEIFCFKNVEKLQSVLIGDPRRRIQ 601

Query: 611 VDLLEFHKILGCSCCYKSGNALLSSWHDSSIMYSLGQEHGDLINLHDWFQAFKTIVLQNT 670
           VDLLEFH IL CSCC KSG  LL S HDSSIMYSL QEHGDLINLHDWFQ+F+TIVLQNT
Sbjct: 602 VDLLEFHNILCCSCCNKSGKGLLPSRHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQNT 661

Query: 671 NXXXXXXXXXXXXXXXXDMNGSGNENEASIQARFCRAITELQITGLIRMPSKRRPDFVQR 730
           N                +MNGS ++NEASIQARFCR ITELQITGL+RMPSKRRPDFVQR
Sbjct: 662 NKRKQKSKQTPLSKKRKEMNGSADQNEASIQARFCRGITELQITGLVRMPSKRRPDFVQR 721

Query: 731 VAFGL 735
           +AFG+
Sbjct: 722 IAFGI 726