Miyakogusa Predicted Gene

Lj3g3v3639450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639450.1 tr|A9TS65|A9TS65_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,71.43,1e-18,seg,NULL,CUFF.46066.1
         (266 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g078130.1 | transmembrane protein, putative | HC | chr4:30...   319   2e-87
Medtr3g094780.1 | transmembrane protein, putative | HC | chr3:43...   112   4e-25
Medtr3g094780.2 | transmembrane protein, putative | HC | chr3:43...   110   1e-24

>Medtr4g078130.1 | transmembrane protein, putative | HC |
           chr4:30071182-30065254 | 20130731
          Length = 257

 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/260 (65%), Positives = 201/260 (77%), Gaps = 6/260 (2%)

Query: 1   MNSLVVSSHTSSFRTFPHSSSTQSFNLFPNLRQPTFLNFHFFSSKFKPPHFIACCXXXXX 60
           MNSL+ SS  ++F     +++T+SFNL    ++    +F F SSKFK P FI+ C     
Sbjct: 1   MNSLLTSSLRAAFPHTSTTTTTKSFNLLHKQQR----HFLFISSKFKSPQFISSCSSSSN 56

Query: 61  XXXXXXXXXXILQNDIFHAEVTTPNVPSFASPVSKFSFTDQAFFLITFIACTTSVTFTSL 120
                     +  +D+FH +V  P V SF SP  K +F+DQAFFL+ FIACTTSV FT L
Sbjct: 57  GSNNLSDEPFLQNDDVFHTQVANPQVSSFNSP--KLNFSDQAFFLLAFIACTTSVAFTGL 114

Query: 121 VFAAVPTLFAMRNAAISLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADG 180
           VFAAVP LFAMRNAAIS SKLADTAREELPSTMAA+RLSGMEISDLTLELSDLSQEI +G
Sbjct: 115 VFAAVPALFAMRNAAISFSKLADTAREELPSTMAAMRLSGMEISDLTLELSDLSQEITEG 174

Query: 181 VNKSAQALQAAEAGIKQIGSMAQEQTMSMIEERANLPIISLQPVVVGAARKTSRAVGRAT 240
           ++KSAQALQAAE GI+ IGS+AQ+QT+SMIEERANLP ISLQPVVVGAARKTSRAVGRAT
Sbjct: 175 ISKSAQALQAAETGIRHIGSVAQKQTISMIEERANLPEISLQPVVVGAARKTSRAVGRAT 234

Query: 241 KSLMNIISGKEGTSEYDDDD 260
           KSLMN+ISG+E T E DD++
Sbjct: 235 KSLMNMISGRESTKENDDEE 254


>Medtr3g094780.1 | transmembrane protein, putative | HC |
           chr3:43261213-43263234 | 20130731
          Length = 246

 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 2/120 (1%)

Query: 96  FSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPSTMAA 155
           ++   +   L+  +A  T++  T L  +A+PTL A + AA SL KL DTAREELP TMAA
Sbjct: 74  WNLPQRHLILLQALAVVTAICTTWLFCSAIPTLLAFKRAAESLEKLMDTAREELPDTMAA 133

Query: 156 IRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSM--IEER 213
           IRLSGMEISDLT +LSDL QEI  GV +S + +++AE G++ + +M    + S+  IE+R
Sbjct: 134 IRLSGMEISDLTTQLSDLGQEITQGVKRSTRVVRSAEQGLRLLTTMPSSSSASLQGIEQR 193


>Medtr3g094780.2 | transmembrane protein, putative | HC |
           chr3:43261213-43263234 | 20130731
          Length = 192

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 74/106 (69%)

Query: 96  FSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPSTMAA 155
           ++   +   L+  +A  T++  T L  +A+PTL A + AA SL KL DTAREELP TMAA
Sbjct: 74  WNLPQRHLILLQALAVVTAICTTWLFCSAIPTLLAFKRAAESLEKLMDTAREELPDTMAA 133

Query: 156 IRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSM 201
           IRLSGMEISDLT +LSDL QEI  GV +S + +++AE G++ + +M
Sbjct: 134 IRLSGMEISDLTTQLSDLGQEITQGVKRSTRVVRSAEQGLRLLTTM 179