Miyakogusa Predicted Gene
- Lj3g3v3639450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3639450.1 tr|A9TS65|A9TS65_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,71.43,1e-18,seg,NULL,CUFF.46066.1
(266 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g078130.1 | transmembrane protein, putative | HC | chr4:30... 319 2e-87
Medtr3g094780.1 | transmembrane protein, putative | HC | chr3:43... 112 4e-25
Medtr3g094780.2 | transmembrane protein, putative | HC | chr3:43... 110 1e-24
>Medtr4g078130.1 | transmembrane protein, putative | HC |
chr4:30071182-30065254 | 20130731
Length = 257
Score = 319 bits (817), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 171/260 (65%), Positives = 201/260 (77%), Gaps = 6/260 (2%)
Query: 1 MNSLVVSSHTSSFRTFPHSSSTQSFNLFPNLRQPTFLNFHFFSSKFKPPHFIACCXXXXX 60
MNSL+ SS ++F +++T+SFNL ++ +F F SSKFK P FI+ C
Sbjct: 1 MNSLLTSSLRAAFPHTSTTTTTKSFNLLHKQQR----HFLFISSKFKSPQFISSCSSSSN 56
Query: 61 XXXXXXXXXXILQNDIFHAEVTTPNVPSFASPVSKFSFTDQAFFLITFIACTTSVTFTSL 120
+ +D+FH +V P V SF SP K +F+DQAFFL+ FIACTTSV FT L
Sbjct: 57 GSNNLSDEPFLQNDDVFHTQVANPQVSSFNSP--KLNFSDQAFFLLAFIACTTSVAFTGL 114
Query: 121 VFAAVPTLFAMRNAAISLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADG 180
VFAAVP LFAMRNAAIS SKLADTAREELPSTMAA+RLSGMEISDLTLELSDLSQEI +G
Sbjct: 115 VFAAVPALFAMRNAAISFSKLADTAREELPSTMAAMRLSGMEISDLTLELSDLSQEITEG 174
Query: 181 VNKSAQALQAAEAGIKQIGSMAQEQTMSMIEERANLPIISLQPVVVGAARKTSRAVGRAT 240
++KSAQALQAAE GI+ IGS+AQ+QT+SMIEERANLP ISLQPVVVGAARKTSRAVGRAT
Sbjct: 175 ISKSAQALQAAETGIRHIGSVAQKQTISMIEERANLPEISLQPVVVGAARKTSRAVGRAT 234
Query: 241 KSLMNIISGKEGTSEYDDDD 260
KSLMN+ISG+E T E DD++
Sbjct: 235 KSLMNMISGRESTKENDDEE 254
>Medtr3g094780.1 | transmembrane protein, putative | HC |
chr3:43261213-43263234 | 20130731
Length = 246
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 96 FSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPSTMAA 155
++ + L+ +A T++ T L +A+PTL A + AA SL KL DTAREELP TMAA
Sbjct: 74 WNLPQRHLILLQALAVVTAICTTWLFCSAIPTLLAFKRAAESLEKLMDTAREELPDTMAA 133
Query: 156 IRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSMAQEQTMSM--IEER 213
IRLSGMEISDLT +LSDL QEI GV +S + +++AE G++ + +M + S+ IE+R
Sbjct: 134 IRLSGMEISDLTTQLSDLGQEITQGVKRSTRVVRSAEQGLRLLTTMPSSSSASLQGIEQR 193
>Medtr3g094780.2 | transmembrane protein, putative | HC |
chr3:43261213-43263234 | 20130731
Length = 192
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%)
Query: 96 FSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSKLADTAREELPSTMAA 155
++ + L+ +A T++ T L +A+PTL A + AA SL KL DTAREELP TMAA
Sbjct: 74 WNLPQRHLILLQALAVVTAICTTWLFCSAIPTLLAFKRAAESLEKLMDTAREELPDTMAA 133
Query: 156 IRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGSM 201
IRLSGMEISDLT +LSDL QEI GV +S + +++AE G++ + +M
Sbjct: 134 IRLSGMEISDLTTQLSDLGQEITQGVKRSTRVVRSAEQGLRLLTTM 179