Miyakogusa Predicted Gene

Lj3g3v3639420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639420.1 tr|B9N805|B9N805_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_584526 PE=4
SV=1,43.97,0.0000000000006,ZF_C3H1,Zinc finger, CCCH-type; no
description,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL;
MAKORIN-REL,CUFF.46062.1
         (338 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g078160.1 | CCCH-type zinc finger protein, putative | HC |...   414   e-116

>Medtr4g078160.1 | CCCH-type zinc finger protein, putative | HC |
           chr4:30090940-30084718 | 20130731
          Length = 393

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/363 (61%), Positives = 251/363 (69%), Gaps = 30/363 (8%)

Query: 1   MRDVCRNFQRGSCQYGERCKFLHAVQTQR------KPNHSYQHQNTNNPFGFGXXXXXXX 54
           MR++C++F RG C++G  C+ +H  Q QR              Q   NPFGFG       
Sbjct: 1   MREICQHFLRGRCRFGTTCRNIHQ-QQQRTSNNNGFGGGGGGGQQNTNPFGFGSTSTSAS 59

Query: 55  XXQQ-RTNPFGFGSQNSSYSNAPSHSDFKPNQFKPFEN-KWSRSSSQPQTGASRQSDNNS 112
              Q +TNPFGFGSQN    N    SDFKPNQ +P EN KWSRSSS+PQ G  RQSDNNS
Sbjct: 60  NNHQPKTNPFGFGSQN----NGAPRSDFKPNQSQPLENNKWSRSSSKPQNGTPRQSDNNS 115

Query: 113 QSVNHKCTDPEICKRQIAEDFENEKPLWILTCYTHSRGAPCDIVGDISYEELRAAAYEDA 172
           Q+VNHKCTDPE CKRQI EDF+ EKPLWILTCY H +GAPCDIVGDISYEELRAAAYED 
Sbjct: 116 QTVNHKCTDPEACKRQIVEDFQQEKPLWILTCYGHCKGAPCDIVGDISYEELRAAAYEDN 175

Query: 173 KKGMSLQSIVEKERNILKSKLIEFEKLRSEPYNIPLDLSLDI-----------------Q 215
           KKGMSL  IVEKE+NIL+SKL+EF KL SEPY +PL  SL+I                 Q
Sbjct: 176 KKGMSLPQIVEKEKNILQSKLVEFNKLLSEPYKMPLTSSLNIQNFQSNGANVNAFQPATQ 235

Query: 216 NHQSNVAHANPFSPTTQNSGPLSVSSFSQLGASLNAGFERTSAPQMNTLAQPNSFGSGGN 275
           N QSN A+AN F P TQN+GPLSVSSFSQLGASLN GF R SAP M+T  QP+S G GGN
Sbjct: 236 NFQSNGANANAFQPATQNNGPLSVSSFSQLGASLNPGFGRPSAPLMSTPVQPSSIGGGGN 295

Query: 276 FLTSNTPNLFGSSISGVQSSPFSAPAQVTMFPGSMSQPQQSPVAFNGSSSTTMFQTTSDV 335
           F T N+ NLFGS ISG Q +PF  P  +T FPGS SQ QQ P  FN +SSTTMFQT  DV
Sbjct: 296 FFTPNSGNLFGSGISGGQVNPFPTPVGLTGFPGSTSQFQQPPFGFNNTSSTTMFQTAPDV 355

Query: 336 QLN 338
           QLN
Sbjct: 356 QLN 358