Miyakogusa Predicted Gene

Lj3g3v3639160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3639160.1 Non Characterized Hit- tr|A9NMG3|A9NMG3_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,39.1,5e-18,seg,NULL,CUFF.46052.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g007210.1 | transmembrane protein, putative | HC | chr5:12...   151   3e-37
Medtr3g115930.1 | transmembrane protein, putative | HC | chr3:54...    49   1e-06
Medtr5g024680.1 | transmembrane protein, putative | HC | chr5:99...    47   6e-06

>Medtr5g007210.1 | transmembrane protein, putative | HC |
           chr5:1243259-1247003 | 20130731
          Length = 163

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 111/164 (67%), Gaps = 17/164 (10%)

Query: 5   SIAPFSIT--GGSHLKQPELCSAKRNLSL--------QRKSSLVITTRKRRSAISAEYRD 54
           S AP SI+  GGSH+K PEL S KRN +L        QRKS+LV T R   S + AE+R+
Sbjct: 4   SFAPLSISSVGGSHVKSPELFSTKRNSALFGPKLAAVQRKSNLV-TRRNLISPVRAEHRN 62

Query: 55  NSXXXXXXXXXXXXXXXXIFGTVAYIFSPQIRRSVLNENEYGFRKAKRP-VYYDEGLERT 113
           N                 IFGT+AY+F+PQIR+S+LNE+EYGFR+A+RP  YYDEGLERT
Sbjct: 63  N---RGGDLVAGFLLGGAIFGTLAYVFAPQIRKSLLNEDEYGFRRARRPPYYYDEGLERT 119

Query: 114 RESLNKKIGKLNSAIDDVSSRLRGAKNVPASH--VGSDPEVEST 155
           RE+LN KI +LNSAID++SSRLRG K VPA+   + SDPE E  
Sbjct: 120 RETLNDKIRQLNSAIDNISSRLRGNKKVPAAAPPLESDPEFEGV 163


>Medtr3g115930.1 | transmembrane protein, putative | HC |
           chr3:54195222-54187330 | 20130731
          Length = 169

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 73  IFGTVAYIFSPQIRRSVLN-ENEYGFRKAKRPVYYDE-GLERTRESLNKKIGKLNSAIDD 130
           + G +  +++PQI  ++   E +   RK  + +Y +E  LE+TR+ L  KI +LNSAID+
Sbjct: 85  VVGALGCVYAPQISNALTGTERKELMRKLPKFIYDEEKALEKTRKVLANKIEQLNSAIDE 144

Query: 131 VSSRLRGAKNVPASHVGSDPEVES 154
           +SS+LR         V SD EVE+
Sbjct: 145 ISSQLRSGDTPNGVAVNSD-EVEA 167


>Medtr5g024680.1 | transmembrane protein, putative | HC |
           chr5:9921144-9916334 | 20130731
          Length = 166

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 73  IFGTVAYIFSPQIRRSVLNENEYGFRKAKRPVYYDE--GLERTRESLNKKIGKLNSAIDD 130
           I G +  +++P+I +++         K      YDE   LE+TR+ L++KI +LNSAID 
Sbjct: 82  IVGALGCVYAPKISKALAGAEGKELMKKLPKFIYDEEKALEKTRKMLSEKIAQLNSAIDG 141

Query: 131 VSSRLR 136
           VS+ LR
Sbjct: 142 VSANLR 147