Miyakogusa Predicted Gene

Lj3g3v3627840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3627840.1 Non Characterized Hit- tr|B6TI72|B6TI72_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,48.7,1e-18,PPP4R2,Protein phosphatase 4 core regulatory subunit
R2; seg,NULL; SUBFAMILY NOT NAMED,NULL; PPP4R2-,gene.g51122.t1.1
         (249 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g077610.1 | PPP4R2 protein | HC | chr4:29714243-29718048 |...   268   5e-72

>Medtr4g077610.1 | PPP4R2 protein | HC | chr4:29714243-29718048 |
           20130731
          Length = 271

 Score =  268 bits (684), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 148/231 (64%), Positives = 166/231 (71%), Gaps = 25/231 (10%)

Query: 22  SNHKDV----EQKFDVPREQVTQILQAIASTGKFWHEWDNLKSMLSFQLKQVLSEYPEAK 77
           SNH D     E K D  R++V +ILQAIASTGKFWH+WDNLKSMLSFQLKQVLSEYPEAK
Sbjct: 35  SNHIDTVAKEEVKSDASRDEVVRILQAIASTGKFWHDWDNLKSMLSFQLKQVLSEYPEAK 94

Query: 78  VTTEEQYASLGESYFELVHKLDEELTCFIDGPPFTLQRLCEILLDAKSIYPNLSKLALAL 137
           +T+E+Q ASLGESY +LV+KLDE LTCFIDGPPFTLQR+CEILL+AK+IYPNLSKLALAL
Sbjct: 95  LTSEQQCASLGESYSDLVNKLDEALTCFIDGPPFTLQRVCEILLEAKNIYPNLSKLALAL 154

Query: 138 EKNLLVTSTLAISTDPCPQVTVQETNEQENASXXXXXXXXXXXXXXXXXXXXSDSAQNGI 197
           EKNLLVTSTL I TDP PQ  VQE ++QE AS                    SD AQNG 
Sbjct: 155 EKNLLVTSTLTICTDPYPQDPVQEPDDQEKAS--------------EMQQQQSDGAQNGT 200

Query: 198 EPSVATDKDEVMAADKDEVMAEAEADTRDDMTVDTEAFEDAKPPETISEPN 248
           E      + E +  D DEVM   EADT DD+ V+ E FEDAK  E  SEPN
Sbjct: 201 ET-----EPEPLVPDTDEVM--VEADTSDDVAVEMETFEDAKSSELDSEPN 244