Miyakogusa Predicted Gene

Lj3g3v3614670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3614670.1 Non Characterized Hit- tr|K4AK08|K4AK08_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,45,0.000000000000006,seg,NULL; coiled-coil,NULL,CUFF.46031.1
         (498 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g077160.1 | hypothetical protein | HC | chr4:29564206-2956...   624   e-179

>Medtr4g077160.1 | hypothetical protein | HC |
           chr4:29564206-29560981 | 20130731
          Length = 502

 Score =  624 bits (1608), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/465 (70%), Positives = 356/465 (76%), Gaps = 25/465 (5%)

Query: 48  NRLGALFDREKRVPDHK--NVPIVLLDHXXXXXXXXXXXX-----------XXXXXMLRA 94
           N LG LFDREKR P     NVP+V+LD                             MLRA
Sbjct: 43  NMLGTLFDREKRAPAEPPINVPVVMLDRCEERRERVVIERGDGSLLEEEKWKFQAEMLRA 102

Query: 95  ECNLLRMEKEIAVKKLERTRAKMERILRSAVRTLVSGRIKICEGKNINMVLDEEIHALTE 154
           ECNLLRMEKEIAVKKLERTR+KMER LRSAV TLVSGRIKICEGKN++ VLDEEIH LT+
Sbjct: 103 ECNLLRMEKEIAVKKLERTRSKMERTLRSAVHTLVSGRIKICEGKNMDRVLDEEIHELTD 162

Query: 155 KLQKLQKRSLVKDFET-RNSRNFDKQVSVLQRRLERIGGPSDEIYLREFEELANVSLSIK 213
           KL+KLQKRS VKDFE  RNSRNFDKQVSVLQRRLE+IGGPSD IYLREFEE+ NVSLS K
Sbjct: 163 KLKKLQKRSTVKDFEGRRNSRNFDKQVSVLQRRLEKIGGPSDGIYLREFEEMENVSLSFK 222

Query: 214 TSSRFDDSIVASGKLNVEILRRKMEGLSKGILLQRMEEEYXXXXXXXXXXXXXXXXXXKR 273
            SSRFDDS+VASGKLNVEILRRKMEGLSKGILL+RMEEEY                  KR
Sbjct: 223 RSSRFDDSVVASGKLNVEILRRKMEGLSKGILLERMEEEY---NSLLLSTASSSASTSKR 279

Query: 274 VEFQDSSSSIRVPHQEKLSYEGNPCSGHCKSVVRRIVEQVRTETEQWSQMQEMLGQVREE 333
           VEFQ       VPHQE LS E N CSGHCK++VRRIVEQVR ETEQWSQMQEMLGQVREE
Sbjct: 280 VEFQ-------VPHQENLSCEANLCSGHCKTIVRRIVEQVRVETEQWSQMQEMLGQVREE 332

Query: 334 MEELQASRDFWEDRALHSDFQIQSLHNSLQEWRQRALSFESEKNELRAKLSMLSGDLERL 393
           MEELQASRDFW+DRALHSD QIQSLHN +QEW+QRALS ES+KNE+ AKLSML  D E+ 
Sbjct: 333 MEELQASRDFWKDRALHSDSQIQSLHNDVQEWKQRALSSESKKNEIEAKLSMLCVDFEKF 392

Query: 394 RKEQNSVQGSKCSSIPLDTQNEFEKRVVVCCSKENNSIVTENSKHNEGMRNGERKAHAGR 453
           + EQN V+G+KC  +PLDTQ EFEKR+V+C SKE +S VTEN KH E +RNGERK HA R
Sbjct: 393 QNEQNVVKGTKCPPVPLDTQKEFEKRIVICSSKEKSSNVTENRKHGEVLRNGERKTHAAR 452

Query: 454 GGFQAPKRSPFQDIG-NSSLLMKQNGGKAIFPLHCHLSSNVEKFY 497
           GG   PKR PFQDIG NSSLL +Q  GKA+FPLHCHLSSN EK Y
Sbjct: 453 GGLLVPKRMPFQDIGNNSSLLTRQQNGKAVFPLHCHLSSNAEKTY 497