Miyakogusa Predicted Gene

Lj3g3v3579360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3579360.1 tr|G7JQK3|G7JQK3_MEDTR AP-2 complex subunit beta
OS=Medicago truncatula GN=MTR_4g076210 PE=4 SV=1,98.66,0,no
description,Armadillo-like helical; seg,NULL; ADAPTER-RELATED PROTEIN
COMPLEX 1, BETA SUBUNIT,NUL,CUFF.46106.1
         (459 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g076210.1 | beta-adaptin-like protein | HC | chr4:29181926...   880   0.0  
Medtr3g109922.1 | beta-adaptin A-like protein | HC | chr3:506893...   271   9e-73
Medtr5g079920.1 | affected traffi cking protein | HC | chr...   125   1e-28
Medtr4g008250.1 | coatomer subunit beta | HC | chr4:1470907-1476...    66   8e-11
Medtr1g040420.1 | hypothetical protein | LC | chr1:18656003-1865...    65   1e-10
Medtr3g118335.1 | hypothetical protein | LC | chr3:55387202-5538...    62   1e-09
Medtr4g069920.1 | coatomer subunit gamma-like protein | HC | chr...    60   3e-09
Medtr7g100250.1 | hypothetical protein | LC | chr7:40321625-4032...    52   1e-06

>Medtr4g076210.1 | beta-adaptin-like protein | HC |
           chr4:29181926-29190719 | 20130731
          Length = 896

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/445 (97%), Positives = 435/445 (97%)

Query: 1   MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
           MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM
Sbjct: 1   MSRNDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60

Query: 61  QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120
           QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI
Sbjct: 61  QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120

Query: 121 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXX 180
           TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM   
Sbjct: 121 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 180

Query: 181 XXXXXXXEIQDNSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 240
                  EIQDNS+RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN
Sbjct: 181 NAVAALAEIQDNSTRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 240

Query: 241 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY 300
           IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY
Sbjct: 241 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY 300

Query: 301 VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 360
           VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE
Sbjct: 301 VALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 360

Query: 361 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 420
           YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR
Sbjct: 361 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 420

Query: 421 YPNTYESIIATLCESLDSLDEPEAK 445
           YPNTYESIIATLCESLD+LDEPEAK
Sbjct: 421 YPNTYESIIATLCESLDTLDEPEAK 445


>Medtr3g109922.1 | beta-adaptin A-like protein | HC |
           chr3:50689381-50699624 | 20130731
          Length = 844

 Score =  271 bits (693), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 161/452 (35%), Positives = 263/452 (58%), Gaps = 21/452 (4%)

Query: 12  TKKGEIPELKEELNS-------QYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 64
           + K E+ +LK +L            D ++D  KKVI+ MT+G DVSSLF ++V C  T +
Sbjct: 18  SGKSEVSDLKLQLRQLAGSRAPGTDDSKRDLYKKVISNMTIGIDVSSLFGEMVMCSATSD 77

Query: 65  LELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 124
           + LKK+ YLY+ NYAK  PDLA+L +N   +D +D +P+IR LA+R++  +RV  + EYL
Sbjct: 78  IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDQDPMIRGLALRSLCSLRVANLVEYL 137

Query: 125 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL-ISDNNPMXXXXXX 183
             PL   LKD++ YVR  A I V KLY I+A    D  F E+LK L ++D +        
Sbjct: 138 VGPLGSGLKDNNSYVRTVAVIGVLKLYHISASTCIDADFPETLKHLMLNDQDTQVVANCL 197

Query: 184 XXXXEIQDNSSRPIFEI-----TSHT---LSKLLTALNECTEWGQVFILDALSRYKAADA 235
               EI    S    E      T H+   +  LL  + E +EW Q  +++ +++Y  +D 
Sbjct: 198 SALQEIWTLESTTSEEAARERETLHSKPIVYYLLNRIKEFSEWAQCLVMELVAKYIPSDN 257

Query: 236 REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SA 294
            E  +I+  +  RLQHAN AVVL+  K+ L     ++  DV + + +++  PL+T + S 
Sbjct: 258 SEIFDIMNLLEDRLQHANGAVVLATTKVFLHLT--LSMADVHQQVYERIKAPLLTQVSSG 315

Query: 295 EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQV 354
            PE  Y  L +++L+V R P I + + K F+C+YN+P YVK  KLE++  +A++ N  ++
Sbjct: 316 SPEQSYAILSHLHLLVMRAPYIFSLDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEI 375

Query: 355 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVI 414
           + E  EYA  VD+   R+++RA+G+ A++ +      +  LL+ ++++ +YV  EA++++
Sbjct: 376 VTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMEKDYVTSEALVLV 434

Query: 415 KDIFRRYPNTYESIIATLCE-SLDSLDEPEAK 445
           KD+ R+YP   +  IA +   S +++ EP+AK
Sbjct: 435 KDLLRKYPQWSQDCIAVVGNISSNNVQEPKAK 466


>Medtr5g079920.1 | affected traffi cking protein | HC |
           chr5:34196045-34185426 | 20130731
          Length = 1126

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 121/211 (57%), Gaps = 13/211 (6%)

Query: 24  LNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQP 83
           L+S++  ++ +A+K+++A +  G DVS+ F  VV  + +++LE+KKLVYLYL++YA+ +P
Sbjct: 41  LDSRFDSEKCEALKRLLALIAQGFDVSNFFPQVVKNVASQSLEVKKLVYLYLLHYAEKRP 100

Query: 84  DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTA 143
           + A+L++N F KD  D NPL+RA A+R M  IR+  I   +   + +C +D   YVRK A
Sbjct: 101 NEALLSINCFQKDLGDTNPLVRAWALRAMAGIRLHAIAPLVLVAVGKCARDPSVYVRKCA 160

Query: 144 AICVAKLYDI----NAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQDNSSRPIFE 199
           A  + KL+D+    +A  +E     E +  L++D++P            +  N+    F 
Sbjct: 161 ANALPKLHDLRMDEHATAIE-----EMVGLLLNDHSPGVVGAAASAFTSVCPNN----FS 211

Query: 200 ITSHTLSKLLTALNECTEWGQVFILDALSRY 230
           +      KL   L +  EWGQ+ ++  L RY
Sbjct: 212 LIGRNYRKLCEILPDVEEWGQIMLIGILLRY 242



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 23/218 (10%)

Query: 241 IVERVTPRLQHANCAVVLSA--VKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEI 298
           +++  +P L   N AVVL+A  V  I+   E     DV     K++  PL+ +L + P  
Sbjct: 335 LLQCTSPLLWSHNSAVVLAAAGVHWIMAPKE-----DV-----KRIVKPLLFVLRSSPAS 384

Query: 299 QYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 358
           +YV L NI +  +  P++ A   +  F    D   +K  KL+I+  +ASD +I  +L EF
Sbjct: 385 RYVVLCNIQVFAKAMPSLFAPHYEDLFIYSVDSYQIKALKLDILSIIASDSSISFILKEF 444

Query: 359 KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV-----------NYVV 407
           ++Y  + D  F    V AIG CA +L + A  C+  LL LI+ +              V+
Sbjct: 445 QDYIRDPDRRFAADTVAAIGLCAQRLPKMATACLEGLLALIRQEFLCGEIRSLDGEEGVL 504

Query: 408 QEAIIVIKDIFRRYPNTYESIIATLCESLDSLDEPEAK 445
            +AI+ I  I +  P +YE +I  L  SLD++  P A+
Sbjct: 505 IQAIMSIISIIKLEPPSYEKVIIQLVRSLDTIKVPAAR 542


>Medtr4g008250.1 | coatomer subunit beta | HC | chr4:1470907-1476142
           | 20130731
          Length = 951

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 95/457 (20%), Positives = 189/457 (41%), Gaps = 53/457 (11%)

Query: 8   YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQT-ENLE 66
           +F         E+KE L       + +A+KK I  +  G+ +  LF  V+  + T ++  
Sbjct: 10  HFDKGTPALATEIKESLEGNDVAAKIEALKKAIMLLLNGETIPQLFITVIRYVLTCDDHT 69

Query: 67  LKKLVYLYL------INYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI 120
           ++KL+ LYL       +  K  P++ IL       + Q PN  IR + +R +  I   +I
Sbjct: 70  VQKLLLLYLEITDKTDSRGKVLPEM-ILICQNLRNNLQSPNEFIRGVTLRFLCRINESEI 128

Query: 121 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLY---------DINAELVEDRGFLESLKDLI 171
            E L   +   L+   P+VR+ A + V  +Y         D   E+VE   FL S +D  
Sbjct: 129 VEPLIPSILSNLEHRHPFVRRNAVLAVMSVYKLPQGEQLLDSAPEIVEK--FLVSEQDAS 186

Query: 172 SDNNPMXXXXXXXXXXEIQDNSSRPIFEITSHTLSKLLTALNECTEWG---QVFILDALS 228
           S  N              QD +           ++ L T ++   +WG   Q+ +L+ + 
Sbjct: 187 SKRNAFLMLFSCA-----QDRA-----------VNYLFTNIDRIIDWGEQLQMVVLELIK 230

Query: 229 RYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN-LCKKMAPP 287
           +    +  E    ++ +   L   + AVV      ++      T+     N  C+ +   
Sbjct: 231 KVCRNNKGEKGKYIKIIISLLSANSTAVVYECAGTLVSLSSAPTAIKAAANTYCQLL--- 287

Query: 288 LVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIY-VKMEKLEIMIKLA 346
              L  ++  ++ + L  +N + +    I+   +       + P + ++ + ++I ++L 
Sbjct: 288 ---LSQSDNNVKLIVLDRLNELKRDNREIMVDMVMDVLRALSTPNHDIRRKTIDIALELI 344

Query: 347 SDRNIDQVLLEFKEYAT-------EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 399
           + +NIDQV++  K+          E + ++ +  V+AI  CAIK    A   + +L++ +
Sbjct: 345 TPKNIDQVVMMLKKEVVKTQSGEHEKNGEYRQMLVQAIHTCAIKFPEVASTVVHLLMDFL 404

Query: 400 KIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL 436
                    + ++ +++I    P    SII  L ++ 
Sbjct: 405 GDTNVASAMDVVVFVREIIETNPKLRVSIITRLLDTF 441


>Medtr1g040420.1 | hypothetical protein | LC |
          chr1:18656003-18654556 | 20130731
          Length = 69

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/29 (100%), Positives = 29/29 (100%)

Query: 1  MSRNDSKYFSTTKKGEIPELKEELNSQYK 29
          MSRNDSKYFSTTKKGEIPELKEELNSQYK
Sbjct: 1  MSRNDSKYFSTTKKGEIPELKEELNSQYK 29


>Medtr3g118335.1 | hypothetical protein | LC |
          chr3:55387202-55387420 | 20130731
          Length = 72

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/29 (96%), Positives = 28/29 (96%)

Query: 1  MSRNDSKYFSTTKKGEIPELKEELNSQYK 29
          MSRNDSKYFST KKGEIPELKEELNSQYK
Sbjct: 1  MSRNDSKYFSTMKKGEIPELKEELNSQYK 29


>Medtr4g069920.1 | coatomer subunit gamma-like protein | HC |
           chr4:26297688-26305339 | 20130731
          Length = 885

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/453 (19%), Positives = 192/453 (42%), Gaps = 48/453 (10%)

Query: 9   FSTTKKGEIPELKEELNSQYKDKRK--DAVKKVIAAMTVGK-----DVSSLFTDVVNCMQ 61
           F   +KG + +     N    D R+    + K++  +  G+     + + +F  V    Q
Sbjct: 21  FLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFSVTKLFQ 80

Query: 62  TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT 121
           + +L L+++VYL +   + S  D  I+  ++ +KD      + RA A+R +  I    + 
Sbjct: 81  SRDLGLRRMVYLIIKELSPSA-DEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLL 139

Query: 122 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXX 181
             +   L++ + D +P V   A +    L   N E+V  + +   +++ +     +    
Sbjct: 140 TQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIV--KRWSNEVQEAVQSRAALVQFH 197

Query: 182 XXXXXXEIQDNSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 240
                 +I+ N    + + +TS T   + + L +C           L RY +   RE+ N
Sbjct: 198 ALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCL----------LIRYTSQVIRESGN 247

Query: 241 IVER--------VTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL 292
           I +         +   L+H +  V+  A K I   +  +TS    R L   +    + L 
Sbjct: 248 ITQSGERPFYDFLESCLRHKSEMVIFEAAKAI-TDLNGVTS----RELTPAITVLQLFLS 302

Query: 293 SAEPEIQYVALRNINLIVQRRPTILAH---EIKVFFCKYNDPIYVKMEKLEIMIKLASDR 349
           S++P +++ A+R +N +    P  + +   +++      N  I      +  ++K  ++ 
Sbjct: 303 SSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATL--AITTLLKTGNES 360

Query: 350 NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY---- 405
           ++D+++ +   + +++  +F    V AI    +K        ++ L  +++ +  +    
Sbjct: 361 SVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKK 420

Query: 406 -VVQEAIIVIKDIFRRYPNTYESIIATLCESLD 437
            +V   +I+I+DI    P+  ES +  LCE ++
Sbjct: 421 AIVDSIVILIRDI----PDAKESGLLHLCEFIE 449


>Medtr7g100250.1 | hypothetical protein | LC |
          chr7:40321625-40320864 | 20130731
          Length = 95

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/24 (95%), Positives = 24/24 (100%)

Query: 1  MSRNDSKYFSTTKKGEIPELKEEL 24
          MSRNDSKYFSTTKKGEIPELKE+L
Sbjct: 1  MSRNDSKYFSTTKKGEIPELKEKL 24