Miyakogusa Predicted Gene

Lj3g3v3579340.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3579340.2 Non Characterized Hit- tr|I1INV3|I1INV3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,34.78,0.0000000007,FYVE/PHD zinc finger,Zinc finger,
FYVE/PHD-type; no description,Zinc finger, RING/FYVE/PHD-type;
seg,CUFF.46012.2
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g076180.1 | DNA-binding; zinc ion-binding; DNA-binding pro...   185   2e-47
Medtr2g084615.1 | DNA-binding and zinc-finger protein | HC | chr...    55   5e-08
Medtr2g084620.2 | DNA-binding and zinc-finger protein | HC | chr...    52   2e-07
Medtr2g084620.1 | DNA-binding and zinc-finger protein | HC | chr...    52   3e-07

>Medtr4g076180.1 | DNA-binding; zinc ion-binding; DNA-binding protein,
            putative | HC | chr4:29158251-29170843 | 20130731
          Length = 1703

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 111/165 (67%), Gaps = 5/165 (3%)

Query: 1    MKSQMIGGRKKGTQSKKNVGRXXXXXXXXXXVTCQKSM-ETGKWKKLVVTSKRK-RTGYS 58
            +  Q IGGRKKGTQSKKNVGR          VT Q+S   TG+ K   VT  RK RT   
Sbjct: 1534 LHKQKIGGRKKGTQSKKNVGRKKGKQSKSKVVTSQRSKGTTGQHKMFAVTPARKTRTKLF 1593

Query: 59   --YWLNGLWLSRKPNDERVMLFKEKKHVVSSKDFSGSRDRPKCCLCCGDGCTLNYIACEI 116
              YWL GL  S+KPNDERVMLFKEKKH++S    +G  + P+CCL CGD    NYIACEI
Sbjct: 1594 NCYWLKGLRFSQKPNDERVMLFKEKKHIISDVS-TGLFEYPECCLRCGDVSASNYIACEI 1652

Query: 117  CGEWFHGDAFGLTVENVGQLIGFRCHVCRDRDAPICPHMNSSALS 161
            C +WFHGDAFGLTVEN  QLIGFRCH CR   APICPH+ ++  S
Sbjct: 1653 CEDWFHGDAFGLTVENARQLIGFRCHACRGSIAPICPHVKNNTPS 1697


>Medtr2g084615.1 | DNA-binding and zinc-finger protein | HC |
            chr2:35841667-35834521 | 20130731
          Length = 1528

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 68   RKPNDERVMLFKEKKHVVSSKDFSGSRDRPKCCLCCGDG-CTLNYIACEICGEWFHGDAF 126
            +K N+E   +    K V+     S  +  P C LC       L YI CE C  W+H +A 
Sbjct: 1109 KKNNNENTGIDFRLKKVLLKGRSSLPQFEPVCHLCHKRYRSDLMYIGCETCTRWYHAEAL 1168

Query: 127  GLTVENVGQLIGFRCHVCRDRDAPICPH-----------MNSSALSLPKNNAANGSAEEL 175
             L    +  ++GF+C  CR   +P+CP+            + S  S  K++ A  S+E L
Sbjct: 1169 ELEESKIFSVLGFKCCRCRKIKSPVCPYSDLVCKEQVGEQSGSRASKRKHSGAGSSSEIL 1228

Query: 176  SSPVSLQPVNEV 187
            +   + +PVN V
Sbjct: 1229 ADIRACEPVNPV 1240


>Medtr2g084620.2 | DNA-binding and zinc-finger protein | HC |
            chr2:35851349-35841698 | 20130731
          Length = 1547

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 68   RKPNDERVMLFKEKKHVVSSKDFSGSRDRPKCCLCCGDG-CTLNYIACEICGEWFHGDAF 126
            +K N+E   +    K V+  +  S  +  P C LC       L YI CE C  W+H +A 
Sbjct: 1233 KKNNNENTGIDFRLKKVLLKRRSSLPQLEPVCHLCHKPYRSDLMYIGCESCTRWYHAEAL 1292

Query: 127  GLTVENVGQLIGFRCHVCRDRDAPICPH-----------MNSSALSLPKNNAANGSAEEL 175
             L    +  ++GF+C  CR   +P+CP+            + S  S  K + A+ S+E +
Sbjct: 1293 ELEESKIFSMLGFKCCRCRKIKSPVCPYSDLVRKEHVVEQSGSRASKRKRSGADSSSETV 1352

Query: 176  SSPVSLQPVNEV 187
            +   + +P + V
Sbjct: 1353 ADLRACEPASPV 1364


>Medtr2g084620.1 | DNA-binding and zinc-finger protein | HC |
            chr2:35851324-35841698 | 20130731
          Length = 1724

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 12/132 (9%)

Query: 68   RKPNDERVMLFKEKKHVVSSKDFSGSRDRPKCCLCCGDG-CTLNYIACEICGEWFHGDAF 126
            +K N+E   +    K V+  +  S  +  P C LC       L YI CE C  W+H +A 
Sbjct: 1233 KKNNNENTGIDFRLKKVLLKRRSSLPQLEPVCHLCHKPYRSDLMYIGCESCTRWYHAEAL 1292

Query: 127  GLTVENVGQLIGFRCHVCRDRDAPICPH-----------MNSSALSLPKNNAANGSAEEL 175
             L    +  ++GF+C  CR   +P+CP+            + S  S  K + A+ S+E +
Sbjct: 1293 ELEESKIFSMLGFKCCRCRKIKSPVCPYSDLVRKEHVVEQSGSRASKRKRSGADSSSETV 1352

Query: 176  SSPVSLQPVNEV 187
            +   + +P + V
Sbjct: 1353 ADLRACEPASPV 1364