Miyakogusa Predicted Gene

Lj3g3v3568300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3568300.1 Non Characterized Hit- tr|F6H698|F6H698_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,51.61,2e-18,seg,NULL; HYPOTHETICAL PROTEIN,NULL; POLYCOMB-LIKE
TRANSCRIPTION FACTOR,NULL,gene.g51071.t1.1
         (294 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g038000.1 | pathogenesis-related homeodomain-like protein,...   167   8e-42
Medtr1g107015.3 | homeobox KN domain protein | HC | chr1:4844764...    92   5e-19
Medtr1g107015.4 | homeobox KN domain protein | HC | chr1:4844764...    92   5e-19
Medtr1g107015.1 | homeobox KN domain protein | HC | chr1:4844666...    92   6e-19
Medtr1g107015.2 | homeobox KN domain protein | HC | chr1:4844771...    92   6e-19

>Medtr2g038000.1 | pathogenesis-related homeodomain-like protein,
           putative | HC | chr2:16499640-16505838 | 20130731
          Length = 707

 Score =  167 bits (424), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 154/330 (46%), Gaps = 69/330 (20%)

Query: 4   STMIQGGKSSLGSRKEG-KDV-DGEVMVQKVXXXXXXXXXXXXXXXXXXXXXXXXXXYLL 61
           S  IQGGK+SL + ++G KDV D E  +QK                            +L
Sbjct: 89  SKKIQGGKTSLNNDRKGEKDVVDQEGNIQKRKRRRKKKRQRHNVDLDDTVRLQRRTRNIL 148

Query: 62  IKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQ---LDSLS 118
           I+MK EQNLIDAY+GEGWKGQSREKIRPE ELQRAKKQIL CKLSIRDAI Q   L S+ 
Sbjct: 149 IRMKQEQNLIDAYAGEGWKGQSREKIRPEMELQRAKKQILKCKLSIRDAIHQLDSLSSVG 208

Query: 119 SL--------GSIEDSVI----------DPDGSV----------YHEHFL---LETK--- 144
           S+        GS+    I           PD  +          +H+  L   LET+   
Sbjct: 209 SIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIP 268

Query: 145 -------------------AGSAIF---------VNDVFKEEAAIPDGDNALLNXXXXXX 176
                              A +A             DVFKEEAAIPDGD ALLN      
Sbjct: 269 PEDQGWFCKYCDCKIEILEATNAHLGTRFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWP 328

Query: 177 XXXXXXXXXXXXXXXXNHS-IKAEGTXXXXXXXXXXXXXXXXXXXECSPVDEGTGLEYYS 235
                           +H     EG                    ECS +DEG  LEYYS
Sbjct: 329 SDDPEDDDYNPERKEESHGGFNTEGNDKNASDDSSSSSSMWSLNGECSLLDEGINLEYYS 388

Query: 236 VNCCIDSDDSGEIACGRRQRKSVDYKKLYD 265
            N  IDSD+SGEIACGRRQR++VDYKKLYD
Sbjct: 389 -NDHIDSDESGEIACGRRQRRAVDYKKLYD 417


>Medtr1g107015.3 | homeobox KN domain protein | HC |
           chr1:48447642-48453047 | 20130731
          Length = 851

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 57/82 (69%)

Query: 59  YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 118
           Y L ++  EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL  KL IRD  + LDSL 
Sbjct: 256 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 315

Query: 119 SLGSIEDSVIDPDGSVYHEHFL 140
           + G + +S+ D +G +  E   
Sbjct: 316 AEGRLPESLFDSEGEIDSEDIF 337


>Medtr1g107015.4 | homeobox KN domain protein | HC |
           chr1:48447642-48453047 | 20130731
          Length = 851

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 57/82 (69%)

Query: 59  YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 118
           Y L ++  EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL  KL IRD  + LDSL 
Sbjct: 256 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 315

Query: 119 SLGSIEDSVIDPDGSVYHEHFL 140
           + G + +S+ D +G +  E   
Sbjct: 316 AEGRLPESLFDSEGEIDSEDIF 337


>Medtr1g107015.1 | homeobox KN domain protein | HC |
           chr1:48446666-48453047 | 20130731
          Length = 926

 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 57/82 (69%)

Query: 59  YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 118
           Y L ++  EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL  KL IRD  + LDSL 
Sbjct: 331 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 390

Query: 119 SLGSIEDSVIDPDGSVYHEHFL 140
           + G + +S+ D +G +  E   
Sbjct: 391 AEGRLPESLFDSEGEIDSEDIF 412


>Medtr1g107015.2 | homeobox KN domain protein | HC |
           chr1:48447717-48453047 | 20130731
          Length = 826

 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 57/82 (69%)

Query: 59  YLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILNCKLSIRDAIRQLDSLS 118
           Y L ++  EQNLIDAYSGEGWKG S EK++PEKE+QRAK +IL  KL IRD  + LDSL 
Sbjct: 231 YYLNRISYEQNLIDAYSGEGWKGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLC 290

Query: 119 SLGSIEDSVIDPDGSVYHEHFL 140
           + G + +S+ D +G +  E   
Sbjct: 291 AEGRLPESLFDSEGEIDSEDIF 312