Miyakogusa Predicted Gene

Lj3g3v3541670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3541670.1 Non Characterized Hit- tr|B6U9Q2|B6U9Q2_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,42.97,3e-18,seg,NULL,CUFF.45967.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g075500.1 | transmembrane protein, putative | HC | chr4:28...   148   1e-36
Medtr2g062220.1 | oxidoreductase/transition metal ion-binding pr...    54   5e-08

>Medtr4g075500.1 | transmembrane protein, putative | HC |
           chr4:28843416-28842625 | 20130731
          Length = 129

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 89/128 (69%)

Query: 1   MAYDRNRGSSVMEGFTLNPLPYPVXXXXXXXXXXXXXSWYLSYEEVVETAQEQFGWVLFA 60
           M+Y+RN GSSV++GFTL+PLPYPV             SWY SYE+VVETAQEQFGWVLFA
Sbjct: 1   MSYNRNNGSSVVDGFTLSPLPYPVLLILAVIFIFLGTSWYFSYEDVVETAQEQFGWVLFA 60

Query: 61  TPVVLILLVRWLSSMENTDWFSGLSPWSGRGRIYEGSSEGSSPWGXXXXXXXXXXMVQFQ 120
            PVVLI +VR +SSME++ WFSG S  + R   Y+  SEGSSPWG          +VQFQ
Sbjct: 61  LPVVLIFIVRLVSSMEDSGWFSGPSVLNRRSTTYQSPSEGSSPWGVAALIVVLLILVQFQ 120

Query: 121 SNFLESWF 128
           S+FLE WF
Sbjct: 121 SSFLEGWF 128


>Medtr2g062220.1 | oxidoreductase/transition metal ion-binding
           protein | HC | chr2:26253043-26252089 | 20130731
          Length = 121

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 38  SWYLSYEEVVETAQEQFGWVLFATPVVLILLVRWLSSMENTDWFSGLSPWSGRGRIYEGS 97
           SWY +YE ++E+  +Q   VL  +P++L+L+V +LS+  +  +FS L P   R  ++   
Sbjct: 29  SWYSNYEPIMESIMDQVKMVLMISPLLLLLVVHFLSNYGDGGFFSSLIPLPERESLHRA- 87

Query: 98  SEGSSPWGXXXXXXXXXXMVQFQSNFLESWFP 129
             G +PWG          MV +QS+F E WFP
Sbjct: 88  --GGTPWGVGLFLVVLLFMVSYQSSFQERWFP 117