Miyakogusa Predicted Gene

Lj3g3v3540650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3540650.1 CUFF.45964.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g117720.1 | transmembrane protein, putative | HC | chr3:55...    78   3e-15
Medtr4g075490.1 | transmembrane protein, putative | HC | chr4:28...    74   4e-14

>Medtr3g117720.1 | transmembrane protein, putative | HC |
          chr3:55123954-55122991 | 20130731
          Length = 90

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 6  TKKRSVEWKEGCTGQTMATVSFSPTLHLFVVLGIVISLLWLSHYKSYKSQMHNSAIEXXX 65
          +K+R  E K+G  G++MA+VS +P  HLF+V GIVISLL  S YK++K+Q+HN+AI    
Sbjct: 3  SKRRGTELKQGWKGKSMASVS-APPFHLFMVFGIVISLLCFSQYKNFKAQLHNTAINFQL 61

Query: 66 XXXXXXXXXXXXXVAYSTSGKLNFH 90
                        +YST GKLNFH
Sbjct: 62 LIFFFPFLLMFFIGSYSTGGKLNFH 86


>Medtr4g075490.1 | transmembrane protein, putative | HC |
          chr4:28841481-28842174 | 20130731
          Length = 54

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 39/53 (73%)

Query: 1  MGWFSTKKRSVEWKEGCTGQTMATVSFSPTLHLFVVLGIVISLLWLSHYKSYK 53
          M WF +KKR+  WK G   Q M TVS SPTLHLFV+ GIVISLLW SHY +YK
Sbjct: 1  MAWFFSKKRNAGWKHGYAEQNMETVSPSPTLHLFVIFGIVISLLWFSHYTTYK 53