Miyakogusa Predicted Gene

Lj3g3v3530630.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3530630.3 Non Characterized Hit- tr|F0ZRI4|F0ZRI4_DICPU
Putative uncharacterized protein OS=Dictyostelium
purp,31.02,2e-16,seg,NULL; SUBFAMILY NOT NAMED,NULL;
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT,NULL;
TRAP_alpha,Tr,CUFF.46210.3
         (300 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g075340.1 | translocon-associated protein alpha subunit | ...   351   6e-97
Medtr3g117740.1 | translocon-associated protein alpha subunit | ...   323   1e-88

>Medtr4g075340.1 | translocon-associated protein alpha subunit | HC
           | chr4:28808054-28804235 | 20130731
          Length = 256

 Score =  351 bits (900), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 201/252 (79%), Gaps = 6/252 (2%)

Query: 43  MASINSFWIXXXXXXXXXXXXXQVAMCQSDSDGAVDAT-DEASDIGIVGDDAQDYGG-ET 100
           MAS NSFWI             QVA     SD  VD T +E SDIG+VG++A D+     
Sbjct: 1   MASFNSFWIFSLAFFLIASPFLQVAR----SDEGVDTTTEEGSDIGVVGEEAPDFDSIGD 56

Query: 101 FTSAPGIETISVFPKNSARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRMLV 160
           F+ APGI+TISVFPKN A+LVTAGEDTELLVGVKNNG+SSLNVVAI+ASVHLP DHR+LV
Sbjct: 57  FSPAPGIDTISVFPKNFAKLVTAGEDTELLVGVKNNGDSSLNVVAIKASVHLPVDHRLLV 116

Query: 161 QNLTAQIFNNGSVPSSAQATFPYLFAVSKFLQPGTFDLVGSIVYEIEDNPYQTTFFNGTI 220
           QNLTAQ+FNNGSVP+SAQATFPY+FAVSKFLQPG+FDLVG+I+YEI++ PYQ+TFFNGT+
Sbjct: 117 QNLTAQVFNNGSVPASAQATFPYIFAVSKFLQPGSFDLVGTIIYEIDEQPYQSTFFNGTV 176

Query: 221 EVVEAGGFLSIESVFXXXXXXXXXXXXXXWIHGQIQNLSKKTKRAPKVEVGTRSIDASTD 280
           EVVEAGG LSIESVF              WIHGQIQNLSKKTKRAPKVEVGTRS DASTD
Sbjct: 177 EVVEAGGILSIESVFLVTLGVALLVLLGLWIHGQIQNLSKKTKRAPKVEVGTRSTDASTD 236

Query: 281 EWLQGTAYAQSL 292
           EWLQGTAY QSL
Sbjct: 237 EWLQGTAYTQSL 248


>Medtr3g117740.1 | translocon-associated protein alpha subunit | HC
           | chr3:55130444-55134283 | 20130731
          Length = 258

 Score =  323 bits (829), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/251 (64%), Positives = 188/251 (74%), Gaps = 5/251 (1%)

Query: 43  MASINSFWIXXXXXXXXXXXXXQVAMCQSDSDGAVDATDEASDIGIVGD---DAQDYGGE 99
           MA IN FW              QVA CQSD   AV+   E +DIGIVGD   DAQD+   
Sbjct: 1   MALINKFWTFSFLLFLIASPFLQVARCQSDE--AVENAGEVNDIGIVGDETDDAQDFADG 58

Query: 100 TFTSAPGIETISVFPKNSARLVTAGEDTELLVGVKNNGESSLNVVAIRASVHLPFDHRML 159
           +F SAPGI TI+VFPKN A+LV  GE+ ELLVG+KN+G+SSLNVVAI+ASVHLP+DHR+L
Sbjct: 59  SFPSAPGINTIAVFPKNIAKLVKGGEEAELLVGLKNDGQSSLNVVAIKASVHLPYDHRLL 118

Query: 160 VQNLTAQIFNNGSVPSSAQATFPYLFAVSKFLQPGTFDLVGSIVYEIEDNPYQTTFFNGT 219
           VQNLT Q+FNNGSVPSS QATFPY+F+VSKFLQPG FDLVG+IVYEI+ +PYQ TF+NGT
Sbjct: 119 VQNLTVQVFNNGSVPSSVQATFPYIFSVSKFLQPGPFDLVGTIVYEIDQHPYQNTFYNGT 178

Query: 220 IEVVEAGGFLSIESVFXXXXXXXXXXXXXXWIHGQIQNLSKKTKRAPKVEVGTRSIDAST 279
           IEVVE G   S+ESVF              WI+GQIQNLSKKTKR+ KVEVGT++ DAS 
Sbjct: 179 IEVVEPGVLFSMESVFLFTLGIALLILLGLWINGQIQNLSKKTKRSSKVEVGTKTTDASM 238

Query: 280 DEWLQGTAYAQ 290
           DEWLQGTAY Q
Sbjct: 239 DEWLQGTAYTQ 249