Miyakogusa Predicted Gene

Lj3g3v3525970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3525970.1 tr|G7IKW7|G7IKW7_MEDTR SNW domain-containing
protein OS=Medicago truncatula GN=MTR_2g030450 PE=4
SV=,87.74,0,seg,NULL; SKIP_SNW,SKI-interacting protein SKIP, SNW
domain; coiled-coil,NULL; NUCLEAR PROTEIN SKIP-,CUFF.45943.1
         (259 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g030450.1 | GAMYB-binding protein | HC | chr2:11456477-114...   412   e-115
Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351...    64   1e-10

>Medtr2g030450.1 | GAMYB-binding protein | HC |
           chr2:11456477-11453867 | 20130731
          Length = 613

 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 223/261 (85%), Gaps = 3/261 (1%)

Query: 1   MAALKELLPQPKSSSTTYYDHSNDPWFKQRFTSSEEEKASAAIKQKPVPPYLKRAGFVPR 60
           MAALKELLP+PKSS+TTYYDHSNDPWFKQRFT++EEEK SAAI  K VPPYLKR+GFVPR
Sbjct: 1   MAALKELLPEPKSSTTTYYDHSNDPWFKQRFTATEEEK-SAAIAPKIVPPYLKRSGFVPR 59

Query: 61  RVEDFGDGGAFPEIHVAQYPLDMGRDKSSKTGSKILPVTVDAHGNVAYDAIVKQNENAKK 120
           +VEDFG+GGAFPEIHVAQYPLDMGR+K+SK GSKILPVTVDAHGNVAYDAIVKQNENAKK
Sbjct: 60  KVEDFGEGGAFPEIHVAQYPLDMGRNKNSKPGSKILPVTVDAHGNVAYDAIVKQNENAKK 119

Query: 121 IVYTQQKDLIPKILKN--XXXXXXXXXXXVQKEIEETMQETKAALEKIVNVRLSAAQPKN 178
           IVYTQ KDLIPKILKN              Q+EI+ETM+ETKAALEKIVNVRLSAAQPKN
Sbjct: 120 IVYTQHKDLIPKILKNDGDDEMEDGEDEDAQREIDETMEETKAALEKIVNVRLSAAQPKN 179

Query: 179 VAKQSSDSKYIKYKPSQQSAAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPKAXXXXXX 238
           V K +SDSKYIKYKPSQQ+AAFNSGA+ERVIRMVEMPVDPLEPPKFKHKRVPKA      
Sbjct: 180 VPKHNSDSKYIKYKPSQQNAAFNSGARERVIRMVEMPVDPLEPPKFKHKRVPKASGSPPV 239

Query: 239 XXXXXXXXXXTVKDQQDWKIP 259
                     TVKDQQDWKIP
Sbjct: 240 PVMHSPPRPVTVKDQQDWKIP 260


>Medtr2g005905.1 | hypothetical protein | LC | chr2:394617-396351
          | 20130731
          Length = 397

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 1  MAALKELLPQPKSSSTTYYDHSNDPWFKQRFTSSEEE 37
          M ALKELLP+PKSS+ TYY HS DPWFKQ FT+++EE
Sbjct: 1  MEALKELLPEPKSSTATYYHHSYDPWFKQLFTTTKEE 37