Miyakogusa Predicted Gene

Lj3g3v3523880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3523880.1 tr|I3SVH6|I3SVH6_LOTJA ATP-dependent Clp protease
proteolytic subunit OS=Lotus japonicus GN=clpP
PE=,99.38,0,CLP_protease,ClpP/TepA; ATP-DEPENDENT CLP PROTEASE
PROTEOLYTIC SUBUNIT,ClpP/TepA; seg,NULL; CLP_PROT,gene.g50976.t1.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g075100.1 | ATP-dependent Clp protease proteolytic protein...   270   3e-73
Medtr7g109610.1 | ATP-dependent Clp protease proteolytic protein...   132   1e-31
Medtr1g086940.1 | ATP-dependent Clp protease proteolytic protein...   127   4e-30
Medtr5g026840.1 | ATP-dependent Clp protease proteolytic protein...   108   2e-24
Medtr7g082980.1 | ATP-dependent Clp protease proteolytic protein...   107   6e-24
Medtr4g069800.1 | ATP-dependent Clp protease proteolytic protein...    97   5e-21
Medtr4g099360.1 | ATP-dependent Clp protease proteolytic protein...    97   8e-21
Medtr4g102000.1 | ATP-dependent Clp protease proteolytic protein...    95   2e-20
Medtr4g069800.2 | ATP-dependent Clp protease proteolytic protein...    92   2e-19
Medtr4g034690.1 | ATP-dependent Clp protease proteolytic protein...    89   1e-18
Medtr4g069800.3 | ATP-dependent Clp protease proteolytic protein...    88   4e-18
Medtr0002s0730.1 | ATP-dependent Clp protease proteolytic protei...    74   5e-14
Medtr7g112640.1 | ATP-dependent Clp protease proteolytic protein...    73   1e-13
Medtr1g106550.1 | ATP-dependent Clp protease proteolytic protein...    59   2e-09

>Medtr4g075100.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr4:28664404-28660842 | 20130731
          Length = 238

 Score =  270 bits (691), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 137/161 (85%)

Query: 1   MVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLN 60
           MVIE SSRGERAYDIFSRLLKERI+CINGPISDDTAHVVVAQLLFLESENPSKPINMYLN
Sbjct: 32  MVIETSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPINMYLN 91

Query: 61  SPGGAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQP 120
           SPGGAVTAGLAIYDTMQYIRSPINTIC                   RR+LPNA+IMIHQP
Sbjct: 92  SPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLCAGAKGQRRALPNATIMIHQP 151

Query: 121 SGGYSGQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELIQ 161
           SGGYSGQAKDIAIHTKQIVR+WD LN LY KHTGQ +++IQ
Sbjct: 152 SGGYSGQAKDIAIHTKQIVRMWDALNELYVKHTGQPLDVIQ 192


>Medtr7g109610.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr7:44857617-44853379 | 20130731
          Length = 301

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 94/151 (62%)

Query: 10  ERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAG 69
           ER   + S+L + RII   GP+ DD A+++V+QLL+L++ +PSK I MY+NSPGG+VTAG
Sbjct: 104 ERFQSVISQLFQYRIIRCGGPVDDDMANIIVSQLLYLDAVDPSKDIVMYVNSPGGSVTAG 163

Query: 70  LAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAK 129
           +AI+DTM++IR  ++T+C                   R SLPN+ IMIHQP GG+ G   
Sbjct: 164 MAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGFQGGQT 223

Query: 130 DIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
           DI I   +++     LN   +  TGQS+E I
Sbjct: 224 DIDIQANEMLHHKANLNGYLSYQTGQSLEKI 254


>Medtr1g086940.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr1:38915594-38921560 | 20130731
          Length = 304

 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 93/151 (61%)

Query: 10  ERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAG 69
           ER   + S+L + RII   G + DD A+++V+QLL+L++ +P+K I MY+NSPGG+VTAG
Sbjct: 107 ERFQSVISQLFQYRIIRCGGAVDDDMANIIVSQLLYLDAVDPNKDIVMYVNSPGGSVTAG 166

Query: 70  LAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAK 129
           +AI+DTM++IR  ++T+C                   R SLPN+ IMIHQP GG+ G   
Sbjct: 167 MAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGTKGKRFSLPNSRIMIHQPLGGFQGGQT 226

Query: 130 DIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
           DI I   +++     LN   +  TGQS+E I
Sbjct: 227 DIDIQANEMLHHKANLNGYLSYQTGQSLEKI 257


>Medtr5g026840.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr5:11082961-11087797 | 20130731
          Length = 297

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 4   EHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG 63
           E + RG  + D    LL+ERI+ +   I D  A  +++QLL L++++P+K I +++NSPG
Sbjct: 79  ERAIRGAES-DTMGLLLRERIVFLGSEIDDFVADAIMSQLLLLDAQDPTKDIKLFINSPG 137

Query: 64  GAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGG 123
           G+++A +AIYD +Q +R+ ++TI                    R ++PN  IMI QP GG
Sbjct: 138 GSLSATMAIYDAVQLVRADVSTIAMGISASTASIILGGGTKGKRLAMPNTRIMIAQPPGG 197

Query: 124 YSGQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            SGQA D+ I  K+I+   + ++ + +  TG+S+E +
Sbjct: 198 ASGQAIDVEIQAKEIMHNKNNVSRIISSFTGRSLEQV 234


>Medtr7g082980.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr7:31837077-31843069 | 20130731
          Length = 297

 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 90/148 (60%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           D  + LL++RI+ +   + D TA  V++QLLFL++++P+K I +++NSPGG+VTAG+ +Y
Sbjct: 79  DTTNMLLRQRIVFLGSQVDDMTADFVISQLLFLDADDPTKDIKLFINSPGGSVTAGMGVY 138

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDIAI 133
           D M+  ++ ++T+C                   R  +PN+ +MIHQP G   G+A +++I
Sbjct: 139 DAMKLCKADVSTVCLGLAASMGAFLLAAGTKGKRYCMPNSRVMIHQPLGSAGGKATEMSI 198

Query: 134 HTKQIVRVWDLLNVLYAKHTGQSIELIQ 161
             ++++     +N + ++ TG+  E I+
Sbjct: 199 RARELMYHKIKINKILSRITGKPEEQIE 226


>Medtr4g069800.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr4:26245523-26250401 | 20130731
          Length = 274

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%)

Query: 12  AYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLA 71
           A D+ S L + RII I  P++   A  V++QL+ L + +P   I MY+N PGG+  + LA
Sbjct: 97  ALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLA 156

Query: 72  IYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDI 131
           IYD M +I+  + T+C                   R S+PNA IMI+QP  G+ G  +D+
Sbjct: 157 IYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDV 216

Query: 132 AIHTKQIVRVWDLLNVLYAKHTGQSIELIQ 161
                + V+    +  +++  TGQ++E +Q
Sbjct: 217 RRLVNESVQSRYKMEKMFSAFTGQALEKVQ 246


>Medtr4g099360.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr4:41221585-41229590 | 20130731
          Length = 304

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 8/156 (5%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG--------GA 65
           D+ S L K RI+ +   +      ++VA+ L+L+ ++ +KPI MY+NS G        G 
Sbjct: 104 DLASYLYKNRIVYLGMSLVPSVTELMVAEFLYLQYDDETKPIYMYINSTGTTKGGEKLGY 163

Query: 66  VTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYS 125
            T  LA+YD M+YI+ PI T+C                   R +LP+++IMI QP   + 
Sbjct: 164 ETEALAVYDLMRYIKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQ 223

Query: 126 GQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELIQ 161
           GQA D+ +  K+I RV   L  L AKHT ++ E I+
Sbjct: 224 GQATDVNLARKEITRVKTELVNLLAKHTEKTPEQIE 259


>Medtr4g102000.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr4:42213779-42209674 | 20130731
          Length = 320

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 3   IEHSSRGERAY---DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYL 59
           + + + GE  +   D+++ L +ER+I I   I ++ ++ ++A LL+L+S + SK + +Y+
Sbjct: 116 VPYRTPGEGTWQWVDLWNALYRERVIFIGQEIDEELSNQILATLLYLDSVDNSKKLYLYI 175

Query: 60  NSPGGAVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQ 119
           N PGG +T  +++YDTMQ +++PI T C                   R ++P A I+I  
Sbjct: 176 NGPGGDLTPCMSLYDTMQSLQTPICTHCIGQAYGLAAFLLAAGEKGNRTAMPLARIVIQS 235

Query: 120 PSGGYSGQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
           P+G   G+A DI     +++R+ D L    A  TGQ +E I
Sbjct: 236 PAGAARGRADDIQNEAAELLRIRDYLFTELANKTGQPVEKI 276


>Medtr4g069800.2 | ATP-dependent Clp protease proteolytic protein |
           HC | chr4:26245605-26250350 | 20130731
          Length = 242

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 75/141 (53%)

Query: 21  KERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIR 80
           + RII I  P++   A  V++QL+ L + +P   I MY+N PGG+  + LAIYD M +I+
Sbjct: 74  RNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIK 133

Query: 81  SPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDIAIHTKQIVR 140
             + T+C                   R S+PNA IMI+QP  G+ G  +D+     + V+
Sbjct: 134 PKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQ 193

Query: 141 VWDLLNVLYAKHTGQSIELIQ 161
               +  +++  TGQ++E +Q
Sbjct: 194 SRYKMEKMFSAFTGQALEKVQ 214


>Medtr4g034690.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr4:18333696-18332187 | 20130731
          Length = 195

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 84/144 (58%), Gaps = 1/144 (0%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           D+++RL +ER++ +   ++ + ++ +V  +++L  E+ ++ + +++NSPGG V +G+AI+
Sbjct: 22  DLYNRLFQERLLFLGQEVNTEISNQLVGLMVYLSLEDKTRDLYLFINSPGGEVISGMAIF 81

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGG-YSGQAKDIA 132
           D MQ + + ++T+C                   R + P+  +MIHQP+   Y GQ  +  
Sbjct: 82  DIMQVVEAEVHTVCVGLAASMGSLLLVGGEFTKRLAFPHLRVMIHQPATSLYEGQVGECM 141

Query: 133 IHTKQIVRVWDLLNVLYAKHTGQS 156
           +  ++++++   +  +YA+ TG++
Sbjct: 142 LEAEELLKMRKTITNIYAQRTGKA 165


>Medtr4g069800.3 | ATP-dependent Clp protease proteolytic protein |
           HC | chr4:26245605-26248939 | 20130731
          Length = 237

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 65/120 (54%)

Query: 12  AYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLA 71
           A D+ S L + RII I  P++   A  V++QL+ L + +P   I MY+N PGG+  + LA
Sbjct: 97  ALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLA 156

Query: 72  IYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSGQAKDI 131
           IYD M +I+  + T+C                   R S+PNA IMI+QP  G+ G  +D+
Sbjct: 157 IYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDV 216


>Medtr0002s0730.1 | ATP-dependent Clp protease proteolytic protein |
           HC | scaffold0002:268560-267910 | 20130731
          Length = 216

 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIY 73
           D+++ + +ER + +   I  +  + +   +++L  E+    I +++NSPGG + +G+AI+
Sbjct: 22  DLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIF 81

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQP-SGGYSGQAKDIA 132
           DTMQ +   I TIC                   R + P+A IM+HQP S  Y  +  +  
Sbjct: 82  DTMQTVTPDIYTICLGIAASMASFILLGGEPAKRIAFPHARIMLHQPASAYYRARTPEFL 141

Query: 133 IHTKQIVRVWDLLNVLYAKHTGQSIELI 160
           +  +++ +V +++  +YA  TG+   ++
Sbjct: 142 LEVEELHKVREMITRVYALRTGKPFWVV 169


>Medtr7g112640.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr7:46332121-46337643 | 20130731
          Length = 322

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 23  RIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG-----GAVTA----GLAIY 73
           RI+ I  P+      +V+A+L+FL+   P +PI +Y+NS G     G   A    G AIY
Sbjct: 119 RIVYIGMPLVPAVTELVIAELMFLQWMAPKEPIYIYINSTGTTRADGETVAMESEGFAIY 178

Query: 74  DTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPSGGYSG--QAKDI 131
           D M  +++ INT+                    R   P+A  MI QP    SG   A D+
Sbjct: 179 DAMMQMKTEINTVALGAAVGQACLLLSAGTKGRRYMTPHAKAMIQQPRVPSSGLRPASDV 238

Query: 132 AIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            IH K+++   D L  L AKHT  S E +
Sbjct: 239 LIHAKEVMVNRDTLVKLLAKHTENSEETV 267


>Medtr1g106550.1 | ATP-dependent Clp protease proteolytic protein |
           HC | chr1:48173405-48168670 | 20130731
          Length = 373

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 14  DIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPG---------G 64
           D+ S LL  RI  +  PI      +++AQL++L+ +NP+KP+ +Y+NS G         G
Sbjct: 155 DLPSLLLDSRICYLGMPIVPAVTELILAQLMWLDYDNPAKPVYVYINSSGTQNEKNETVG 214

Query: 65  AVTAGLAIYDTMQYIRSPINTICXXXXXXXXXXXXXXXXXXXRRSLPNASIMIHQPS-GG 123
           + T   +I D + +I+S + T+                    R  LP++S  +  P    
Sbjct: 215 SETDAYSIADMISHIKSDVYTVNLAMAYGQAAMILSLGKKGYRAVLPHSSAKVFLPKVHR 274

Query: 124 YSGQAKDIAIHTKQIVRVWDLLNVLYAKHTGQSIELI 160
            SG   D+ I  K++    +    L AK TG+S E I
Sbjct: 275 SSGSVADMWIKAKELEANSEYYIELLAKGTGKSKEEI 311