Miyakogusa Predicted Gene

Lj3g3v3523820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3523820.1 Non Characterized Hit- tr|B9FR06|B9FR06_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,92.31,0.000000000005,no description,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; Oligoxyloglucan
redu,gene.g50972.t1.1
         (405 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g075040.1 | photosystem II stability/assembly factor HCF13...   566   e-161

>Medtr4g075040.1 | photosystem II stability/assembly factor HCF136 |
           HC | chr4:28614207-28620841 | 20130731
          Length = 396

 Score =  566 bits (1460), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/409 (71%), Positives = 308/409 (75%), Gaps = 36/409 (8%)

Query: 1   MATLQFTFTDXXXXXXXXXXXXXXXXXXXXXX----XFVVKASFDISRTRRQXXXXXXXX 56
           MATLQFTF+D                           FVVKAS + SRTRRQ        
Sbjct: 1   MATLQFTFSDSTTTLCRPLSQLPSSKSTIIHSPRPRSFVVKASLEPSRTRRQFIAETTAI 60

Query: 57  XXXXXXXXXRSDEALAEWERVYLPIDPGVVLLDIAFVPEDPNHGKGTCHFTSNLVFSALN 116
                    +S+E L+EWERVYLPIDPGVVLLDIAFVP+DPNHG                
Sbjct: 61  SVLLPSQLAKSEETLSEWERVYLPIDPGVVLLDIAFVPQDPNHG---------------- 104

Query: 117 CISMVGLVGFLLGTRQTLLETKDGGNTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGK 176
                    FLLGTRQTLLETKDGG TW PRSIPSAEDEDFNYRFNSISF+GKEGWIVGK
Sbjct: 105 ---------FLLGTRQTLLETKDGGRTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGK 155

Query: 177 PNILLYTSDAGESWGRIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAA 236
           P ILLYT DAGESW RIPLSA+LPGDMVYIKAT +KSAEMVTDEGAIYVTSNRGYNWKAA
Sbjct: 156 PAILLYTPDAGESWERIPLSAELPGDMVYIKATNEKSAEMVTDEGAIYVTSNRGYNWKAA 215

Query: 237 VQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQENIHI 296
           VQE+VSATLNRTVSSGISGASYYTGTFNTVNRSPDG YVAVSSRGNFY+TWEPGQ     
Sbjct: 216 VQESVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYMTWEPGQ----- 270

Query: 297 ILAYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEVPVQSRGFGI 356
             AYWQPHNRAVARRIQNMGWRAD              SKGTGITEEFEE+PVQSRGFGI
Sbjct: 271 --AYWQPHNRAVARRIQNMGWRADGGLWLLVRGGSLFLSKGTGITEEFEEIPVQSRGFGI 328

Query: 357 LDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVRDKAADNIAANLYSVKSV 405
           LDVGYRSTDEAWAAGGSG+LLRTNNGGKSW+RDKAADNIAANLYSVK +
Sbjct: 329 LDVGYRSTDEAWAAGGSGILLRTNNGGKSWIRDKAADNIAANLYSVKFI 377