Miyakogusa Predicted Gene

Lj3g3v3513690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3513690.1 tr|G7JPH8|G7JPH8_MEDTR Photosystem II
stability/assembly factor HCF136 OS=Medicago truncatula
GN=MTR,87.63,0,seg,NULL; Oligoxyloglucan reducing end-specific
cellobiohydrolase,NULL; SUBFAMILY NOT NAMED,NULL; FA,CUFF.45963.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g075040.1 | photosystem II stability/assembly factor HCF13...   629   e-180

>Medtr4g075040.1 | photosystem II stability/assembly factor HCF136 |
           HC | chr4:28614207-28620841 | 20130731
          Length = 396

 Score =  629 bits (1623), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 314/396 (79%), Positives = 328/396 (82%), Gaps = 4/396 (1%)

Query: 1   MATLQFTFTDXXXXXXXXXXXXXXXXXXXXXX----XFVVKASFDISRTRRQXXXXXXXX 56
           MATLQFTF+D                           FVVKAS + SRTRRQ        
Sbjct: 1   MATLQFTFSDSTTTLCRPLSQLPSSKSTIIHSPRPRSFVVKASLEPSRTRRQFIAETTAI 60

Query: 57  XXXXXXXXXRSDEALAEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGG 116
                    +S+E L+EWERVYLPIDPGVVLLDIAFVP+DPNHGFLLGTRQTLLETKDGG
Sbjct: 61  SVLLPSQLAKSEETLSEWERVYLPIDPGVVLLDIAFVPQDPNHGFLLGTRQTLLETKDGG 120

Query: 117 NTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSDAGESWGRIPLSAQLPG 176
            TW PRSIPSAEDEDFNYRFNSISF+GKEGWIVGKP ILLYT DAGESW RIPLSA+LPG
Sbjct: 121 RTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTPDAGESWERIPLSAELPG 180

Query: 177 DMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTG 236
           DMVYIKAT +KSAEMVTDEGAIYVTSNRGYNWKAAVQE+VSATLNRTVSSGISGASYYTG
Sbjct: 181 DMVYIKATNEKSAEMVTDEGAIYVTSNRGYNWKAAVQESVSATLNRTVSSGISGASYYTG 240

Query: 237 TFNTVNRSPDGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADXXXXXXXX 296
           TFNTVNRSPDG YVAVSSRGNFY+TWEPGQAYWQPHNRAVARRIQNMGWRAD        
Sbjct: 241 TFNTVNRSPDGRYVAVSSRGNFYMTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVR 300

Query: 297 XXXXXXSKGTGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVR 356
                 SKGTGITEEFEE+PVQSRGFGILDVGYRSTDEAWAAGGSG+LLRTNNGGKSW+R
Sbjct: 301 GGSLFLSKGTGITEEFEEIPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTNNGGKSWIR 360

Query: 357 DKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 392
           DKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG
Sbjct: 361 DKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 396