Miyakogusa Predicted Gene
- Lj3g3v3513520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3513520.1 tr|E9EB59|E9EB59_METAQ Cutinase negative acting
protein OS=Metarhizium acridum (strain CQMa 102)
GN=,35.58,8e-19,seg,NULL; RRM_1,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,R,CUFF.45946.1
(310 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 345 3e-95
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 345 4e-95
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 344 6e-95
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 344 7e-95
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 167 1e-41
Medtr3g050860.1 | acetyltransferase (GNAT) domain protein | LC |... 132 5e-31
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 68 1e-11
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 1e-11
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 67 2e-11
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 67 3e-11
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 67 3e-11
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 66 4e-11
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 65 1e-10
Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297... 60 2e-09
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 60 2e-09
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 60 2e-09
Medtr1g073000.3 | polyadenylate-binding protein II | HC | chr1:3... 60 3e-09
Medtr1g073000.1 | polyadenylate-binding protein II | HC | chr1:3... 60 3e-09
Medtr1g073000.2 | polyadenylate-binding protein II | HC | chr1:3... 60 3e-09
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr4g094260.1 | polyadenylate-binding protein II | HC | chr4:3... 60 3e-09
Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422... 59 5e-09
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422... 59 9e-09
Medtr8g089990.1 | polyadenylate-binding protein II | HC | chr8:3... 58 1e-08
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 54 1e-07
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 54 2e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 54 2e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 53 3e-07
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 53 4e-07
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 52 5e-07
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 52 5e-07
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 51 1e-06
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 50 2e-06
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 50 2e-06
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 50 2e-06
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 49 7e-06
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 8e-06
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 49 9e-06
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 192/223 (86%), Gaps = 3/223 (1%)
Query: 20 TKTPQKKVKDVEMVDA-SSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDC 78
+KTPQKK+KDVEMVDA SGK AP TPA EN GSKTLFVGNLSFSVQRSD+E FF+DC
Sbjct: 340 SKTPQKKIKDVEMVDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDC 399
Query: 79 GEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPN 138
GEVVDVR ++DE+GRFKGFGHVEFA+A AAQSALE NG ELLQR VRLDLARERGA+TPN
Sbjct: 400 GEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLARERGAFTPN 459
Query: 139 SGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHF-GSCGEITRISVPKDFESG 197
+ +N S Q GGRGQSQTVFVRGFDK GED+I++ L EHF G+CGE TR+S+PKDFESG
Sbjct: 460 NN-SNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESG 518
Query: 198 NVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQ 240
KGFAY+DF D++S +KALELH+S+L G+ L+VDEAKPRD+Q
Sbjct: 519 YSKGFAYMDFKDSDSFSKALELHESELDGYQLSVDEAKPRDSQ 561
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 192/223 (86%), Gaps = 3/223 (1%)
Query: 20 TKTPQKKVKDVEMVDA-SSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDC 78
+KTPQKK+KDVEMVDA SGK AP TPA EN GSKTLFVGNLSFSVQRSD+E FF+DC
Sbjct: 328 SKTPQKKIKDVEMVDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDC 387
Query: 79 GEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPN 138
GEVVDVR ++DE+GRFKGFGHVEFA+A AAQSALE NG ELLQR VRLDLARERGA+TPN
Sbjct: 388 GEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLARERGAFTPN 447
Query: 139 SGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHF-GSCGEITRISVPKDFESG 197
+ +N S Q GGRGQSQTVFVRGFDK GED+I++ L EHF G+CGE TR+S+PKDFESG
Sbjct: 448 NN-SNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESG 506
Query: 198 NVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQ 240
KGFAY+DF D++S +KALELH+S+L G+ L+VDEAKPRD+Q
Sbjct: 507 YSKGFAYMDFKDSDSFSKALELHESELDGYQLSVDEAKPRDSQ 549
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 344 bits (883), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 192/223 (86%), Gaps = 3/223 (1%)
Query: 20 TKTPQKKVKDVEMVDA-SSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDC 78
+KTPQKK+KDVEMVDA SGK AP TPA EN GSKTLFVGNLSFSVQRSD+E FF+DC
Sbjct: 305 SKTPQKKIKDVEMVDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDC 364
Query: 79 GEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPN 138
GEVVDVR ++DE+GRFKGFGHVEFA+A AAQSALE NG ELLQR VRLDLARERGA+TPN
Sbjct: 365 GEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLARERGAFTPN 424
Query: 139 SGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHF-GSCGEITRISVPKDFESG 197
+ +N S Q GGRGQSQTVFVRGFDK GED+I++ L EHF G+CGE TR+S+PKDFESG
Sbjct: 425 NN-SNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESG 483
Query: 198 NVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQ 240
KGFAY+DF D++S +KALELH+S+L G+ L+VDEAKPRD+Q
Sbjct: 484 YSKGFAYMDFKDSDSFSKALELHESELDGYQLSVDEAKPRDSQ 526
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 344 bits (882), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 192/223 (86%), Gaps = 3/223 (1%)
Query: 20 TKTPQKKVKDVEMVDA-SSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDC 78
+KTPQKK+KDVEMVDA SGK AP TPA EN GSKTLFVGNLSFSVQRSD+E FF+DC
Sbjct: 293 SKTPQKKIKDVEMVDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDC 352
Query: 79 GEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPN 138
GEVVDVR ++DE+GRFKGFGHVEFA+A AAQSALE NG ELLQR VRLDLARERGA+TPN
Sbjct: 353 GEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLARERGAFTPN 412
Query: 139 SGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHF-GSCGEITRISVPKDFESG 197
+ +N S Q GGRGQSQTVFVRGFDK GED+I++ L EHF G+CGE TR+S+PKDFESG
Sbjct: 413 NN-SNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESG 471
Query: 198 NVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQ 240
KGFAY+DF D++S +KALELH+S+L G+ L+VDEAKPRD+Q
Sbjct: 472 YSKGFAYMDFKDSDSFSKALELHESELDGYQLSVDEAKPRDSQ 514
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 141/219 (64%), Gaps = 17/219 (7%)
Query: 25 KKVKDVEMVDASSGKNA-----PKTPAAQTE-NEGSKTLFVGNLSFSVQRSDVENFFKDC 78
K VKD++M DA + + P+TPA Q E N+ SKT+ V NLSF VQR+++E+ FKDC
Sbjct: 415 KDVKDIQMSDADADAASAENKLPETPATQKEKNDASKTVCVRNLSFDVQRAEIESIFKDC 474
Query: 79 GEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPN 138
GEVVDVR+ D EFAT AA+ AL+ + ++ RP+++ +A G PN
Sbjct: 475 GEVVDVRVHVDV----------EFATTEAAEKALQLDHTKFANRPIKVGIAPGEGECFPN 524
Query: 139 SGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGN 198
+ + SFQKG Q TVFV GFD E+ IK+SL+ HF CGEITRIS+P+ +SGN
Sbjct: 525 R-SLSISFQKGESFQPLTVFVIGFDTSVAEEKIKASLKAHFSPCGEITRISLPRYHDSGN 583
Query: 199 VKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPR 237
+KGFA+LDF D + KAL+L + +G + L+V +AKPR
Sbjct: 584 IKGFAHLDFKDIDGYKKALQLDQTAIGDYWLSVVKAKPR 622
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 98/143 (68%), Gaps = 3/143 (2%)
Query: 32 MVDASSGKNAPKTPAAQTE-NEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE 90
+VDAS +N PK+PA E N SKT++V NLS++V+RSD+EN FKDCGE+VD+RL TD
Sbjct: 269 VVDASIVENKPKSPATPNETNVASKTIYVRNLSYTVERSDMENIFKDCGEIVDIRLHTDR 328
Query: 91 DGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPN--SGAANNSFQK 148
+G+FKG HV+FATA AAQ AL +N R + + +A ERG Y+PN + ++SF K
Sbjct: 329 EGKFKGHAHVQFATADAAQKALVFNKKVFYNRLMFVGIAFERGIYSPNRSNSTWSSSFHK 388
Query: 149 GGRGQSQTVFVRGFDKFQGEDDI 171
R QSQT+ V+ FD ED +
Sbjct: 389 DERFQSQTIPVKCFDTSLAEDKL 411
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 37/230 (16%)
Query: 20 TKTPQKKVKDVEMVDASSGKNAPKTPAAQTENEG-SKTLFVGNLSFSVQRSDVENFFKDC 78
+++P+ ++VE + + + +TP E + SKT+ V NLS+SV+R+D+E+ FKDC
Sbjct: 126 SESPEYIGEEVEEKVSEAHQERHETPVTINEKDAPSKTICVRNLSYSVERTDMEDIFKDC 185
Query: 79 GEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPN 138
GEVVDVR TD +GRF+GFG+VEF TA AA+ AL+ + +ELL R +R+D+A E+ Y P
Sbjct: 186 GEVVDVRFNTDREGRFRGFGYVEFGTAEAAKKALKLDSTELLNRRMRVDIAIEKSGYPPC 245
Query: 139 SGAANNSFQKGGRGQ-------------------------------SQTVFVRGFDKFQG 167
++S GG Q S+T++VR +
Sbjct: 246 RSNLSSSVHTGGNLQSHPHTVKGVVDASIVENKPKSPATPNETNVASKTIYVRNL-SYTV 304
Query: 168 EDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL 217
E +S ++ F CGEI I + D E G KG A++ F+ ++ KAL
Sbjct: 305 E---RSDMENIFKDCGEIVDIRLHTDRE-GKFKGHAHVQFATADAAQKAL 350
>Medtr3g050860.1 | acetyltransferase (GNAT) domain protein | LC |
chr3:20039441-20042747 | 20130731
Length = 362
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 79/117 (67%), Gaps = 11/117 (9%)
Query: 42 PKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVE 101
P TPA + N KTL+VGNLSFSVQ+SD+ENFF+ CGEVVDVRLA+ EDG+ KGFGH
Sbjct: 254 PNTPATKKFNSRVKTLYVGNLSFSVQKSDIENFFRVCGEVVDVRLASCEDGKLKGFGH-- 311
Query: 102 FATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVF 158
AL+ NG ELLQR VRLDLARER AYTPN+ ++ G +T F
Sbjct: 312 ---------ALQMNGQELLQRAVRLDLARERSAYTPNNNRRAGFYKPGLYKGKKTTF 359
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 45 PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGR-FKGFGHVEFA 103
P A E + +T+F + DV FF G+V DVRL D + R KG G++EF
Sbjct: 193 PEADPERD-QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 251
Query: 104 TAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFD 163
A + A+ +G LL +PV + + E S A++ + G G G
Sbjct: 252 DAMSVPMAIALSGQLLLGQPVMVKPS-EAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNL 310
Query: 164 KFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDS- 222
F + +++L+E F G+I + +P D E+G+ KGF ++ F+ A L+
Sbjct: 311 HF---NMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKL 367
Query: 223 DLGGFTLAV 231
++ G T+ V
Sbjct: 368 EIAGRTIKV 376
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 19/196 (9%)
Query: 44 TPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEF 102
T +Q + + ++VG + + D+ ++F+ CG + ++ T D G+F+G + F
Sbjct: 209 TTTSQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISF 268
Query: 103 ATAAAAQSALEYNGSEL--LQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVR 160
T AAA+ AL +G+++ L ++ A + +TP N G T
Sbjct: 269 KTEAAAKRALALDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEIT---- 324
Query: 161 GFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELH 220
+ L++ F +C + I + D E+G +G+A++DF D+ S+ AL L
Sbjct: 325 -----------EEELRKFFSNCN-VKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALD 372
Query: 221 DSDLGGFTLAVDEAKP 236
S L G + + A P
Sbjct: 373 QSVLFGRPVRISCAVP 388
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 52 EGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQS 110
EG ++VG+LS+ + ++ FF +C V +RL D E G F+G+ HV+F + + ++
Sbjct: 309 EGYNRIYVGSLSWEITEEELRKFFSNCN-VKAIRLGMDKETGEFRGYAHVDFGDSQSLKT 367
Query: 111 ALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVF---------VRG 161
AL + S L RPVR+ A P +G + + +K G G+ V G
Sbjct: 368 ALALDQSVLFGRPVRISCAVPLNK-KPVAGEKSVAVEKPGAGEKSIAVEKSVIAEKSVAG 426
Query: 162 FDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVK 200
GE KS E G+ G+ + + P SG K
Sbjct: 427 EKSGAGE---KSFAVEQPGAGGKPSSVEQPSSVASGKRK 462
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 31 EMVDASSGKNAPKT--PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLAT 88
EM D+ + +T P A E + +T+F + DV FF G+V DVRL
Sbjct: 190 EMRDSRRFREKKETVEPEADPERD-QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIM 248
Query: 89 DEDGR-FKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLAR-ERGAYTPNS--GAANN 144
D + R KG G++EF A + A+ +G LL +PV + + E+ N+ GAA
Sbjct: 249 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGV 308
Query: 145 SFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAY 204
G + V F+ +S L+E F G + + +P D E+G+ KGF +
Sbjct: 309 VGPYGAVDRKLYVGNLHFNM------TESQLREIFEPFGTVEVVQLPLDLETGHCKGFGF 362
Query: 205 LDFSDTNSVNKALELHDS-DLGGFTLAV 231
+ F+ A L+ ++ G T+ V
Sbjct: 363 IQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 31 EMVDASSGKNAPKT--PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLAT 88
EM D+ + +T P A E + +T+F + DV FF G+V DVRL
Sbjct: 190 EMRDSRRFREKKETVEPEADPERD-QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIM 248
Query: 89 DEDGR-FKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLAR-ERGAYTPNS--GAANN 144
D + R KG G++EF A + A+ +G LL +PV + + E+ N+ GAA
Sbjct: 249 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGV 308
Query: 145 SFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAY 204
G + V F+ +S L+E F G + + +P D E+G+ KGF +
Sbjct: 309 VGPYGAVDRKLYVGNLHFNM------TESQLREIFEPFGTVEVVQLPLDLETGHCKGFGF 362
Query: 205 LDFSDTNSVNKALELHDS-DLGGFTLAV 231
+ F+ A L+ ++ G T+ V
Sbjct: 363 IQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 31 EMVDASSGKNAPKT--PAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLAT 88
EM D+ + +T P A E + +T+F + DV FF G+V DVRL
Sbjct: 190 EMRDSRRFREKKETVEPEADPERD-QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIM 248
Query: 89 DEDGR-FKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLAR-ERGAYTPNS--GAANN 144
D + R KG G++EF A + A+ +G LL +PV + + E+ N+ GAA
Sbjct: 249 DRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGV 308
Query: 145 SFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAY 204
G + V F+ +S L+E F G + + +P D E+G+ KGF +
Sbjct: 309 VGPYGAVDRKLYVGNLHFNM------TESQLREIFEPFGTVEVVQLPLDLETGHCKGFGF 362
Query: 205 LDFSDTNSVNKALELHDS-DLGGFTLAV 231
+ F+ A L+ ++ G T+ V
Sbjct: 363 IQFAHIEHAKAAQSLNGKLEIAGRTIKV 390
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNG 116
+FV NL+ S+ S +E+ FK G ++ ++ EDG+ KG+G V+F T +A +A+E
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIE--- 156
Query: 117 SELLQRPVRLD--LARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSS 174
RL+ L ++ Y ++ G + ++++ D D ++
Sbjct: 157 --------RLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDL----DISETL 204
Query: 175 LQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE-LHDSDLGGFTLAVDE 233
L+E F S G+I ++V KD +G KGF +++F + +A+E ++ LG L V
Sbjct: 205 LREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVAR 263
Query: 234 AKPR 237
A+ +
Sbjct: 264 AQKK 267
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE-YN 115
L++ NL + + + F G+++ + +A D +G KGFG V F A+ A+E N
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMN 250
Query: 116 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQ-----SQTVFVRGFDKFQGEDD 170
G +L + + + A+++ + F++ + Q ++V+ D D+
Sbjct: 251 GLQLGSKILYVARAQKKAE---REQILHQQFEEKRKEQVLKYKGSNIYVKNID-----DN 302
Query: 171 IK-SSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFT 228
+ L++HF CG IT + +D + G KGF ++ FS NKA+ H G
Sbjct: 303 VSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKP 361
Query: 229 LAVDEAKPRDNQ 240
L V A+ ++++
Sbjct: 362 LYVSLAQRKEDR 373
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
A G +FV NL+ S+ + + F+ G ++ ++A EDG+ KGFG+++F +
Sbjct: 95 ADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEE 154
Query: 107 AAQSALE-YNGSELLQRPVRL-DLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDK 164
+A A++ NGS + + + + R+ P+ A + ++V+ D
Sbjct: 155 SANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDA-----------KFTNLYVKNLDP 203
Query: 165 FQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD-SD 223
E L E F S G+I +++ KD E+G KGF ++++ + +A+E D S
Sbjct: 204 VVTEKH----LGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAMEAMDGSQ 258
Query: 224 LGGFTLAVDEAKPR 237
G L V A+ +
Sbjct: 259 FGSKILYVARAQKK 272
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 9/186 (4%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE-YN 115
L+V NL V + F G++V + + DE+G+ KGFG V + + A+ A+E +
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMD 255
Query: 116 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSL 175
GS+ + L +AR + + +KG + ++V+ D G+++ L
Sbjct: 256 GSQFGSKI--LYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEE----L 309
Query: 176 QEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDL-GGFTLAVDEA 234
++HF +CGE+ V +D + G KGF ++ FS K++ + + G L VD A
Sbjct: 310 RDHFSACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFA 368
Query: 235 KPRDNQ 240
+ ++++
Sbjct: 369 QKKEDR 374
>Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:29709858-29712924 | 20130731
Length = 292
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 30 VEMVDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD 89
V+ D G P E+ ++++ VGN+ ++ +V+ F+ CG V V++ TD
Sbjct: 144 VDREDIVRGPAGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTD 203
Query: 90 EDGRFKGFGHVEFATAAAAQSALEYNGSELLQR 122
+ GR +GF VEF A A Q+AL NGSEL R
Sbjct: 204 KFGRPEGFACVEFVEADAVQNALGLNGSELHGR 236
>Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:29710530-29713176 | 20130731
Length = 283
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 30 VEMVDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD 89
V+ D G P E+ ++++ VGN+ ++ +V+ F+ CG V V++ TD
Sbjct: 135 VDREDIVRGPAGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTD 194
Query: 90 EDGRFKGFGHVEFATAAAAQSALEYNGSELLQR 122
+ GR +GF VEF A A Q+AL NGSEL R
Sbjct: 195 KFGRPEGFACVEFVEADAVQNALGLNGSELHGR 227
>Medtr2g070540.1 | CTC-interacting domain protein | HC |
chr2:29723724-29729859 | 20130731
Length = 298
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
AQ E+ +T++V ++ V + F +CG+V+D R+ D + F VEFA
Sbjct: 105 AQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLR-FAFVEFADEH 163
Query: 107 AAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQ----SQTVFVRGF 162
A++AL G+ L PVR + + A P N +F + ++TV+
Sbjct: 164 GARAALNLGGTVLGYYPVR--VLPSKTAILP----VNPTFLPRSDDEREMCTRTVYCTNI 217
Query: 163 DKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDS 222
DK + ++K+ + SCGE+TR+ + D + A+++F+ S AL
Sbjct: 218 DKKISQAEVKNFFE---SSCGEVTRLRLLGD--QVHSTRIAFVEFAMAESAIVALNCSGM 272
Query: 223 DLGGFTLAVDEAK 235
LG + V +K
Sbjct: 273 LLGTQPIRVSPSK 285
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK-GFGHVEFATAAAAQSAL 112
+ +L+VG+L +V S + + F G+VV VR+ D R G+G+V ++ A AL
Sbjct: 33 TTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 92
Query: 113 E-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDI 171
+ N + L RP+R+ + + S +K G+G +F++ DK D
Sbjct: 93 DVLNFTPLNNRPIRIMYSHR-----------DPSIRKSGQG---NIFIKNLDK---AIDH 135
Query: 172 KSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
K +L + F S G I V D SG KG+ ++ F + KA+E
Sbjct: 136 K-ALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIE 180
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 23/203 (11%)
Query: 23 PQKKVKDVEMVDASSGKNAP-------KTPAAQTENEGSKTLFVGNLSFSVQRSDVENFF 75
PQ + +++++ + N P + P+ + +G+ +F+ NL ++ + + F
Sbjct: 85 PQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGN--IFIKNLDKAIDHKALHDTF 142
Query: 76 KDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAY 135
G ++ ++A D G+ KG+G V+F T AAQ A+E LL ++ Y
Sbjct: 143 SSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLN---------DKQVY 193
Query: 136 TPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFE 195
G R + VFV+ + +D++K + FG G IT V +D +
Sbjct: 194 VGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKT----FGEFGTITSAVVMRDGD 249
Query: 196 SGNVKGFAYLDFSDTNSVNKALE 218
G K F +++F T+ +A+E
Sbjct: 250 -GKSKCFGFVNFESTDDAARAVE 271
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 26/174 (14%)
Query: 52 EGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQS 110
E +TL++G+L + V + + + F GEV+ +++ ++ G+ +G+G +EF + +AA+
Sbjct: 12 EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
Query: 111 ALE-YNGSEL--LQRPVRLDLARERGAYTPNSGAANNSFQKGGR----GQSQTVFVRGFD 163
L+ YNG+++ ++ RL+ A SF G R G ++FV
Sbjct: 72 VLQTYNGTQMPGTEQTFRLNWA---------------SFGIGERRPDAGPDHSIFVGDLA 116
Query: 164 KFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL 217
+ ++ + + H+GS + V D +G KG+ ++ FSD + N+A+
Sbjct: 117 PDVTDYLLQETFRTHYGS---VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAM 167
>Medtr1g073000.3 | polyadenylate-binding protein II | HC |
chr1:32414624-32417752 | 20130731
Length = 187
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
A+ E +++++VGN+ ++ +V+ F+ CG V V + TD+ G+ KGF +VEF A
Sbjct: 86 AEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAD 145
Query: 107 AAQSALEYNGSELLQRPVRLDLAR 130
A Q+AL N +EL R +++ R
Sbjct: 146 AVQNALILNETELHGRQLKVSAKR 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 122 RPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGS 181
R ++ + +E GA +G++ + +K +++++V D +++ Q+HF S
Sbjct: 62 REMQAKVEKEMGAVQDPAGSSVSQAEKE-EVDARSIYVGNVDYACTPEEV----QQHFQS 116
Query: 182 CGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
CG + R+++ D + G KGFAY++F + ++V AL L++++L G L V
Sbjct: 117 CGTVNRVTILTD-KFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKV 165
>Medtr1g073000.1 | polyadenylate-binding protein II | HC |
chr1:32414615-32419459 | 20130731
Length = 187
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
A+ E +++++VGN+ ++ +V+ F+ CG V V + TD+ G+ KGF +VEF A
Sbjct: 86 AEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAD 145
Query: 107 AAQSALEYNGSELLQRPVRLDLAR 130
A Q+AL N +EL R +++ R
Sbjct: 146 AVQNALILNETELHGRQLKVSAKR 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 122 RPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGS 181
R ++ + +E GA +G++ + +K +++++V D +++ Q+HF S
Sbjct: 62 REMQAKVEKEMGAVQDPAGSSVSQAEKE-EVDARSIYVGNVDYACTPEEV----QQHFQS 116
Query: 182 CGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
CG + R+++ D + G KGFAY++F + ++V AL L++++L G L V
Sbjct: 117 CGTVNRVTILTD-KFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKV 165
>Medtr1g073000.2 | polyadenylate-binding protein II | HC |
chr1:32414624-32419295 | 20130731
Length = 187
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 47 AQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAA 106
A+ E +++++VGN+ ++ +V+ F+ CG V V + TD+ G+ KGF +VEF A
Sbjct: 86 AEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAD 145
Query: 107 AAQSALEYNGSELLQRPVRLDLAR 130
A Q+AL N +EL R +++ R
Sbjct: 146 AVQNALILNETELHGRQLKVSAKR 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 122 RPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGS 181
R ++ + +E GA +G++ + +K +++++V D +++ Q+HF S
Sbjct: 62 REMQAKVEKEMGAVQDPAGSSVSQAEKE-EVDARSIYVGNVDYACTPEEV----QQHFQS 116
Query: 182 CGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAV 231
CG + R+++ D + G KGFAY++F + ++V AL L++++L G L V
Sbjct: 117 CGTVNRVTILTD-KFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKV 165
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALE-Y 114
LFVG LS+SV +++ F G+V +VR+ D+D GR +GFG V F+ AA+SA +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 115 NGSELLQRPVRLDLARERGAYTP 137
+G LL RP+R++ A E+ P
Sbjct: 98 DGKALLGRPLRINFALEKPRGIP 120
>Medtr4g094260.1 | polyadenylate-binding protein II | HC |
chr4:37371600-37377016 | 20130731
Length = 199
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE 113
++++FVGN+ ++ DV+ F+ CG V V + TD+ G+ KG+ +VEF A Q AL
Sbjct: 67 ARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALL 126
Query: 114 YNGSELLQRPVRLDLAR 130
N SEL R +++ R
Sbjct: 127 LNESELHGRQLKVTAKR 143
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 154 SQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSV 213
++++FV D +D+ Q+HF SCG + R+++ D + G KG+AY++F + +V
Sbjct: 67 ARSIFVGNVDYACTPEDV----QQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFVEVEAV 121
Query: 214 NKALELHDSDLGGFTLAV 231
+AL L++S+L G L V
Sbjct: 122 QEALLLNESELHGRQLKV 139
>Medtr3g092550.1 | CTC-interacting domain protein | HC |
chr3:42290596-42284870 | 20130731
Length = 384
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEY 114
+T++V ++ V + F +CG+VVD R+ D + + F VEF A++AL
Sbjct: 199 RTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILR-FAFVEFTDEVGARAALNL 257
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQ----SQTVFVRGFDKFQGEDD 170
+G+ L P+R + + A P N +F + ++T++ DK + D
Sbjct: 258 SGTMLGYYPLR--VLPSKTAIAP----VNPTFLPRSEDEREMCTRTIYCTNLDKKLTQAD 311
Query: 171 IKSSLQEHF--GSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFT 228
+K HF CGE+ R+ + D+ A+++F+ S AL LG
Sbjct: 312 VK-----HFFESICGEVQRLRLLGDYHHST--RIAFVEFAVAESAIAALSCSGVVLGSLP 364
Query: 229 LAVDEAK 235
+ V +K
Sbjct: 365 IRVSPSK 371
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSAL 112
S LF+G LS++V + + F G+VV+ R+ TD E GR +GFG V F + +A SAL
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 113 EYNGSELLQRPVRLDLARERGA 134
+G +L R +R+ A +R A
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQA 116
>Medtr3g092510.1 | CTC-interacting domain protein | HC |
chr3:42267137-42262435 | 20130731
Length = 376
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 20/187 (10%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEY 114
+T++V ++ V + + F +CG+VVD R+ D + + F +EF +A++A+
Sbjct: 192 RTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILR-FAFIEFTDEESARAAVSL 250
Query: 115 NGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQ----SQTVFVRGFDKFQGEDD 170
+G+ L P+R + + A P N +F + S+T++ DK + D
Sbjct: 251 SGTMLGYYPLR--VLPSKTAIAP----VNPTFLPRSEDEREMCSRTIYCTNIDKKLTQAD 304
Query: 171 IKSSLQEHF--GSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFT 228
+K HF CGE+ R+ + D++ A+++F+ S AL LG
Sbjct: 305 VK-----HFFESICGEVHRLRLLGDYQHS--TRIAFVEFAVAESAIAALSCSGVILGALP 357
Query: 229 LAVDEAK 235
+ V +K
Sbjct: 358 IRVSPSK 364
>Medtr8g089990.1 | polyadenylate-binding protein II | HC |
chr8:37630582-37636333 | 20130731
Length = 216
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 42 PKTPAAQTENE---GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFG 98
P + AA EN+ ++++FVGN+ ++ +V+ F+ CG V V + TD+ G+ KGF
Sbjct: 72 PASVAASQENKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 131
Query: 99 HVEFATAAAAQSALEYNGSELLQRPVRL 126
+VEF A Q AL + SEL R +++
Sbjct: 132 YVEFVETEAVQEALLLSESELHGRQLKV 159
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 154 SQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSV 213
+++VFV D +++ Q+HF SCG + R+++ D + G KGFAY++F +T +V
Sbjct: 87 ARSVFVGNVDYACTPEEV----QQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVETEAV 141
Query: 214 NKALELHDSDLGGFTLAV 231
+AL L +S+L G L V
Sbjct: 142 QEALLLSESELHGRQLKV 159
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 51 NEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQS 110
N K L V NL +S+ + D+++ F CG V+DV + +DG+ KG+ V + AQ+
Sbjct: 92 NNVKKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQA 151
Query: 111 ALE-YNGSELLQRPVRLDLAR 130
A++ +N +E+ R +R++ A+
Sbjct: 152 AVDKFNATEISGRILRVEFAK 172
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL 112
S LF+G +S+S + + F G+V+D ++ D D GR +GFG + FAT+ A SAL
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 113 E-YNGSELLQRPVRLDLARER 132
+ + EL R VR++ A ER
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSAL 112
S LF+G +S+S + + F G+V+D ++ D D GR +GFG + FAT+ A SAL
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 113 E-YNGSELLQRPVRLDLARER 132
+ + EL R VR++ A ER
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 44 TPAA--QTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHV 100
TP A + S L+VG +S+S + + F G+V+D R+ D E GR KGFG V
Sbjct: 27 TPLAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFV 86
Query: 101 EFATAAAAQSALE-YNGSELLQRPVRLDLARER 132
FAT+ A +AL+ + EL R VR++ A+ER
Sbjct: 87 TFATSEEASAALQAMDNQELHGRTVRVNYAQER 119
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 56 TLFVGNLSFSVQRSDV-ENFFKDCGEVVDVRLATDED-GRFKGFGHVEFA-TAAAAQSAL 112
++FVG+L+ V S + E F V ++ D + GR KG+G V F + +Q+
Sbjct: 191 SIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMT 250
Query: 113 EYNGSELLQRPVRLDLA--RERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
+ NG RP+R+ A R+ + P + S Q + T+FV G D ++D
Sbjct: 251 QMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDED 310
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
+K + ++ GEI + +P KG ++ F++ N+ +AL+
Sbjct: 311 LKQTFSQY----GEIASVKIPVG------KGCGFVQFANRNNAEEALQ 348
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSALE-Y 114
LFVG +S++ + + F G+V+D R+ D E GR KGFG V + T A SA++
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 115 NGSELLQRPVRLDLARER 132
+G +L R V ++ A ER
Sbjct: 106 DGQDLYGRRVGVNFANER 123
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSALE-Y 114
LFVG +S++ + + F G+V+D R+ D E GR KGFG V + T A SA++
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 115 NGSELLQRPVRLDLARER 132
+G +L R V ++ A ER
Sbjct: 106 DGQDLYGRRVGVNFANER 123
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSALE-Y 114
LF+G +S+S + + F GEV+D R+ D E GR +GFG + F + A SA++
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 115 NGSELLQRPVRLDLARER 132
+G +L R VR++ A ER
Sbjct: 104 DGQDLHGRRVRVNYANER 121
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 15/195 (7%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALE 113
+ LFVGNL FSV + + F++ G+V V + D+ GR +GFG V ++AA ++A +
Sbjct: 84 QRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQ 143
Query: 114 -YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGG---RGQSQTVFVRGFDKFQ--- 166
NG + R +R++ + NS N + GG RG + G ++
Sbjct: 144 QLNGYVVDGRELRVNAGPPPPPRSENSRFGENP-RFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 167 ---GEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD-S 222
G D++ +L+ FG G++ V D ESG +GF ++ FS + V+ A+ D +
Sbjct: 203 LAWGVDNL--ALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGA 260
Query: 223 DLGGFTLAVDEAKPR 237
DL G + V A R
Sbjct: 261 DLNGRAIRVSPADSR 275
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 38 GKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKG 96
G + P+ P ++G + VGNL++ V +E+ F + G+V++ ++ D E GR +G
Sbjct: 179 GGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRG 238
Query: 97 FGHVEFATAAAAQSALE-YNGSELLQRPVRLDLARER 132
FG V F++A SA+ +G++L R +R+ A R
Sbjct: 239 FGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPADSR 275
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 15/195 (7%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALE 113
+ LFVGNL FSV + + F++ G+V V + D+ GR +GFG V ++AA ++A +
Sbjct: 84 QRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQ 143
Query: 114 -YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGG---RGQSQTVFVRGFDKFQ--- 166
NG + R +R++ + NS N + GG RG + G ++
Sbjct: 144 QLNGYVVDGRELRVNAGPPPPPRSENSRFGENP-RFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 167 ---GEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD-S 222
G D++ +L+ FG G++ V D ESG +GF ++ FS + V+ A+ D +
Sbjct: 203 LAWGVDNL--ALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGA 260
Query: 223 DLGGFTLAVDEAKPR 237
DL G + V A R
Sbjct: 261 DLNGRAIRVSPADSR 275
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 38 GKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKG 96
G + P+ P ++G + VGNL++ V +E+ F + G+V++ ++ D E GR +G
Sbjct: 179 GGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRG 238
Query: 97 FGHVEFATAAAAQSALE-YNGSELLQRPVRLDLARER 132
FG V F++A SA+ +G++L R +R+ A R
Sbjct: 239 FGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPADSR 275
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 22/176 (12%)
Query: 46 AAQTENEGSKT-LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFA 103
AA N+ + T L+VG+L V S + + F G+VV VR+ D + G+G+V F+
Sbjct: 14 AAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFS 73
Query: 104 TAAAAQSALE-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGF 162
A A++ N + L +P+R+ + R SGAAN +F++
Sbjct: 74 NPHDAAKAMDVLNFTPLNNKPIRI-MYSHRDPSVRKSGAAN-------------IFIKNL 119
Query: 163 DKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
D+ D K +L + F G I + D SG KG+ ++ F + S A++
Sbjct: 120 DR---AIDHK-ALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAID 170
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G+ +F+ NL ++ + + F G ++ ++A D G KG+G V+F +AQSA+
Sbjct: 110 GAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAI 169
Query: 113 E-YNGSELLQRPVRL-DLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
+ NG L +PV + R++ ++ +N F V+V+ + +DD
Sbjct: 170 DKLNGMLLNDKPVYVGHFQRKQDR---DNALSNAKF--------NNVYVKNLSESVTDDD 218
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDF 207
+K++ FG G IT V +D + G K F +++F
Sbjct: 219 LKNT----FGEYGTITSAVVMRDVD-GKSKCFGFVNF 250
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCG--EVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE- 113
LFVGN F V + F G E+ +V D +GFG V +T A+SA+E
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLS-RGFGFVTMSTVEEAESAVEK 169
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
+NG + R + ++ A +G+ + A +F+ R ++V E D S
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLR-----IYVA---NLAWEVD-NS 220
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD-SDLGGFTL--A 230
L++ F G+I V D E+G +GF ++ SD +N A+ D L G T+ +
Sbjct: 221 RLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVS 280
Query: 231 VDEAKPR 237
V E +PR
Sbjct: 281 VAEDRPR 287
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSAL 112
+ +L+VG+L +V S + + F G+VV VR+ D R G+G+V F A AL
Sbjct: 31 TTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAL 90
Query: 113 E-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDI 171
+ N + + + +R+ + R + SG AN +F++ DK D
Sbjct: 91 DVLNFTPMNNKSIRV-MYSHRDPSSRKSGTAN-------------IFIKNLDK---TIDH 133
Query: 172 KSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
K +L + F S G+I + D SG KG+ ++ F +S A++
Sbjct: 134 K-ALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAID 178
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G+ +F+ NL ++ + + F G+++ ++ATD G+ KG+G V+F +AQ+A+
Sbjct: 118 GTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAI 177
Query: 113 E-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDI 171
+ NG L ++ + + + + + V+V+ + EDD+
Sbjct: 178 DKLNGM----------LINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDL 227
Query: 172 KSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
K+ FG+ G IT + +D + G K F +++F + KA+E
Sbjct: 228 KN----EFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVE 269
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 25/190 (13%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCG--EVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL-E 113
+FVGNL F V + F+ G E+ +V D D R +GFG V +T+ + A+ +
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTD-RSRGFGFVTMSTSEEVERAVNK 182
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGE---DD 170
++G EL R + ++ A RG TP R + F G + G D
Sbjct: 183 FSGFELDGRLLTVNKAAPRG--TP-------------RLRQPRTFNSGLRAYVGNLPWDV 227
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD-SDLGGFTL 229
SSL++ F G++ V D E+G +GF ++ S+ +N A+ D G +
Sbjct: 228 DNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAI 287
Query: 230 AVD--EAKPR 237
V+ E +PR
Sbjct: 288 RVNVAEERPR 297
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
GS +F+ NL S+ + + F G V+ ++A D +G+ KG+G V+F AA+SA+
Sbjct: 116 GSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAI 175
Query: 113 EYNGSELLQRPVRLD--LARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
+ +LD L ++ Y + G + V+V+ + ++D
Sbjct: 176 K-----------QLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDED 224
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
+K + FG G IT +V KD +G + F +++F +S A+E
Sbjct: 225 LK----QLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVE 267
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 21/186 (11%)
Query: 41 APKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK-GFGH 99
AP + A + +L+VG+L SV + + F +VV +R+ D+ R G+ +
Sbjct: 16 APSSAALTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAY 75
Query: 100 VEFATAAAAQSALE-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVF 158
V F A A +A E N + L ++P+R+ ++ + S +K G G VF
Sbjct: 76 VNFTNAQDAANAKELLNFTPLNEKPIRIMFSQR-----------DPSVRKSGSG---NVF 121
Query: 159 VRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
++ D D K +L + F + G + V D +G KG+ ++ F + + A++
Sbjct: 122 IKNLDT---SIDHK-ALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIK 176
Query: 219 LHDSDL 224
D L
Sbjct: 177 QLDGML 182
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
GS +F+ NL S+ + + F G V+ ++A D +G+ KG+G V+F AA+SA+
Sbjct: 116 GSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAI 175
Query: 113 EYNGSELLQRPVRLD--LARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
+ +LD L ++ Y + G + V+V+ + ++D
Sbjct: 176 K-----------QLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDED 224
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
+K + FG G IT +V KD +G + F +++F +S A+E
Sbjct: 225 LK----QLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVE 267
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 21/186 (11%)
Query: 41 APKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFK-GFGH 99
AP + A + +L+VG+L SV + + F +VV +R+ D+ R G+ +
Sbjct: 16 APSSAALTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAY 75
Query: 100 VEFATAAAAQSALE-YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVF 158
V F A A +A E N + L ++P+R+ ++ + S +K G G VF
Sbjct: 76 VNFTNAQDAANAKELLNFTPLNEKPIRIMFSQR-----------DPSVRKSGSG---NVF 121
Query: 159 VRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
++ D D K +L + F + G + V D +G KG+ ++ F + + A++
Sbjct: 122 IKNLDT---SIDHK-ALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIK 176
Query: 219 LHDSDL 224
D L
Sbjct: 177 QLDGML 182
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCG--EVVDVRLATDEDGRFKGFGHVEFATAAAAQSALE- 113
LFVGN F V + F G E+ +V D +GFG V +T A+SA+E
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLS-RGFGFVTMSTVEEAESAVEK 169
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
+NG + R + ++ A +G+ + A +F+ R ++V E D S
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLR-----IYVA---NLAWEVD-NS 220
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHD 221
L++ F G+I V D E+G +GF ++ SD +N A+ D
Sbjct: 221 RLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALD 268
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALEYN 115
LF+G +S+ + +F++ G+VV+ + D GR +GFG V FA + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--- 62
Query: 116 GSELLQRPVRLDLARERGAYTP----NSGAANNSFQKGGRG----QSQTVFVRGFDKFQG 167
+++ V E P N +NS G +++ +FV G
Sbjct: 63 ----MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVT 118
Query: 168 EDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGF 227
E D K+ +F G IT + V D + +GF ++ + +V K L +L G
Sbjct: 119 ESDFKN----YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
Query: 228 TLAVDEAKPRD 238
+ V A P+D
Sbjct: 175 MVEVKRAVPKD 185
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALEYN 115
LF+G +S+ + +F++ G+VV+ + D GR +GFG V FA + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--- 62
Query: 116 GSELLQRPVRLDLARERGAYTP----NSGAANNSFQKGGRG----QSQTVFVRGFDKFQG 167
+++ V E P N +NS G +++ +FV G
Sbjct: 63 ----MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVT 118
Query: 168 EDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGF 227
E D K+ +F G IT + V D + +GF ++ + +V K L +L G
Sbjct: 119 ESDFKN----YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
Query: 228 TLAVDEAKPRD 238
+ V A P+D
Sbjct: 175 MVEVKRAVPKD 185
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALEYN 115
LF+G +S+ + +F++ G+VV+ + D GR +GFG V FA + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--- 62
Query: 116 GSELLQRPVRLDLARERGAYTP----NSGAANNSFQKGGRG----QSQTVFVRGFDKFQG 167
+++ V E P N +NS G +++ +FV G
Sbjct: 63 ----MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVT 118
Query: 168 EDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGF 227
E D K+ +F G IT + V D + +GF ++ + +V K L +L G
Sbjct: 119 ESDFKN----YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
Query: 228 TLAVDEAKPRD 238
+ V A P+D
Sbjct: 175 MVEVKRAVPKD 185
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 13/190 (6%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRF-KGFGHVEFATAAAAQSALEYN 115
LFVG +S +++ F G+V+ ++ D R +GFG V F+ ++A +AL+ +
Sbjct: 12 LFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ-D 70
Query: 116 GSELLQRPVRLDLARERG------AYTPNSGAANNSFQKGGRG-QSQTVFVRGFDKFQGE 168
+L R V + A R G + + ++ G +++ +FV G
Sbjct: 71 THAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANMSV 130
Query: 169 DDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFT 228
++ K +F G IT + V +D + +GF ++ F +SV + DL G
Sbjct: 131 EEFK----RYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQ 186
Query: 229 LAVDEAKPRD 238
+ V A PR+
Sbjct: 187 VEVKRAVPRE 196
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDED-GRFKGFGHVEFATAAAAQSALE-Y 114
++ GNL + + D+ + F + ++ ++ + D GR +GFG V F TA ++AL
Sbjct: 214 IYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAM 273
Query: 115 NGSELLQRPVRLDLARERGAYTP 137
NG E+ RP+RL+LA R + +P
Sbjct: 274 NGVEVQGRPLRLNLAAARTSPSP 296
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALEYN 115
LF+G +S+ ++ +F GEV++ + D GR +GFG V F+ A A+ +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--- 64
Query: 116 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKG------GRGQSQTVFVRGFDKFQGED 169
+ + + E P N + Q G G G+++ +FV G E
Sbjct: 65 ----IDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 170 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTL 229
D K +F G IT + V D + +GF ++ + +V++ L +L G +
Sbjct: 121 DFK----MYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
Query: 230 AVDEAKPRD 238
V A P++
Sbjct: 177 EVKRAVPKE 185
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDE-DGRFKGFGHVEFATAAAAQSALEYN 115
LF+G +S+ ++ +F GEV++ + D GR +GFG V F+ A A+ +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--- 64
Query: 116 GSELLQRPVRLDLARERGAYTPNSGAANNSFQKG------GRGQSQTVFVRGFDKFQGED 169
+ + + E P N + Q G G G+++ +FV G E
Sbjct: 65 ----IDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 170 DIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTL 229
D K +F G IT + V D + +GF ++ + +V++ L +L G +
Sbjct: 121 DFK----MYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
Query: 230 AVDEAKPRD 238
V A P++
Sbjct: 177 EVKRAVPKE 185
>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902502-8910404 | 20130731
Length = 685
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 49 TENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAA 107
TE+ S+T+FV N+ F+ + + F GEV+ V + TD G+ KG +VEF A
Sbjct: 505 TEDVDSRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEFMLKEA 564
Query: 108 AQSALEYNGSELLQRPVRL 126
A +AL +G+ + R +++
Sbjct: 565 ADNALSLDGTSFMSRILKV 583
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 54 SKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSAL 112
S LF+G LS++V + + F G+VV+ R+ TD E GR +GFG V F + +A SAL
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 113 EYNGSELL 120
+G ++
Sbjct: 95 SMDGQVVI 102
>Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902513-8908790 | 20130731
Length = 582
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 49 TENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAA 107
TE+ S+T+FV N+ F+ + + F GEV+ V + TD G+ KG +VEF A
Sbjct: 505 TEDVDSRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEFMLKEA 564
Query: 108 AQSALEYNGSELLQRPVR 125
A +AL +G+ + R ++
Sbjct: 565 ADNALSLDGTSFMSRILK 582
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 22/168 (13%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G LF+ NL S+ + F G V+ ++A D +G KG G V+F +A++A+
Sbjct: 111 GFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAI 170
Query: 113 EYNGSELLQRPVRLD--LARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
E +LD L ++ Y + + +S F + K E
Sbjct: 171 E-----------KLDGMLMNDKKVYV--------GYFVRCQERSSPKFTNVYVKNLSESY 211
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
L++ F S G IT + + K +++GN K F +++F ++S A+E
Sbjct: 212 TYEDLKQLFNSFGVITSVLIMK-YDNGNSKCFGFVNFQSSDSAATAVE 258
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVD-VRLATDEDGRFKGFGHVEFATAAAAQSALE 113
+ L V + + V ++ + GE+ D + + GR +GFG+V FA+ A+ L
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL- 62
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
+G +L D E TP + + +FV E+ +S
Sbjct: 63 -SGEHVLG-----DRMLEVKVATPKEE------MRAPAKKVTRIFVARIPPSVTEETFRS 110
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFTLAVD 232
HF G+IT + +PKD S +G ++ F + SV + E H +LGG + VD
Sbjct: 111 ----HFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVD 164
Query: 233 EAKPRDN 239
A P+++
Sbjct: 165 RATPKED 171
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 98/240 (40%), Gaps = 43/240 (17%)
Query: 33 VDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDG 92
V ++ K + PA + +FV + SV + F+ G++ D+ + D+
Sbjct: 75 VKVATPKEEMRAPAKKVTR-----IFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGS 129
Query: 93 RF-KGFGHVEFATAAAAQSAL----EYNGSELLQ----------RPV-RLDLARERGAYT 136
+ +G G + F A + ++ + E GS ++ +P R+ GAY
Sbjct: 130 KMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYN 189
Query: 137 PNSGAANNSFQKG------------GRGQ-----SQTVFVRGFDKFQGEDDIKSSLQEHF 179
A G GRG+ S+ +FV +D L+++F
Sbjct: 190 AYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSED----LRQYF 245
Query: 180 GSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDN 239
G G I + +P+D + +GF ++ F+D ++ + L ++ G +A+D A P D+
Sbjct: 246 GRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADR-VSLRPHEICGHEVAIDSATPVDD 304
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVD-VRLATDEDGRFKGFGHVEFATAAAAQSALE 113
+ L V + + V ++ + GE+ D + + GR +GFG+V FA+ A+ L
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL- 62
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
+G +L D E TP + + +FV E+ +S
Sbjct: 63 -SGEHVLG-----DRMLEVKVATPKEE------MRAPAKKVTRIFVARIPPSVTEETFRS 110
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFTLAVD 232
HF G+IT + +PKD S +G ++ F + SV + E H +LGG + VD
Sbjct: 111 ----HFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVD 164
Query: 233 EAKPRDN 239
A P+++
Sbjct: 165 RATPKED 171
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVD-VRLATDEDGRFKGFGHVEFATAAAAQSALE 113
+ L V + + V ++ + GE+ D + + GR +GFG+V FA+ A+ L
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL- 62
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
+G +L D E TP + + +FV E+ +S
Sbjct: 63 -SGEHVLG-----DRMLEVKVATPKEE------MRAPAKKVTRIFVARIPPSVTEETFRS 110
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFTLAVD 232
HF G+IT + +PKD S +G ++ F + SV + E H +LGG + VD
Sbjct: 111 ----HFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVD 164
Query: 233 EAKPRDN 239
A P+++
Sbjct: 165 RATPKED 171
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 21/187 (11%)
Query: 55 KTLFVGNLSFSVQRSDVENFFKDCGEVVD-VRLATDEDGRFKGFGHVEFATAAAAQSALE 113
+ L V + + V ++ + GE+ D + + GR +GFG+V FA+ A+ L
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL- 62
Query: 114 YNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKS 173
+G +L D E TP + + +FV E+ +S
Sbjct: 63 -SGEHVLG-----DRMLEVKVATPKEE------MRAPAKKVTRIFVARIPPSVTEETFRS 110
Query: 174 SLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKAL-ELHDSDLGGFTLAVD 232
HF G+IT + +PKD S +G ++ F + SV + E H +LGG + VD
Sbjct: 111 ----HFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVD 164
Query: 233 EAKPRDN 239
A P+++
Sbjct: 165 RATPKED 171
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 57 LFVGNLSFSVQRSDVENFFKDCGEVVDVRLATD-EDGRFKGFGHVEFATAAAAQSALE-Y 114
L V +S+S + + F GEV+D R+ D E GR +GFG + F + A SA++
Sbjct: 52 LSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 111
Query: 115 NGSELLQRPVRLDLARER 132
+G +L R VR++ A ER
Sbjct: 112 DGQDLHGRRVRVNYANER 129
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 53 GSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSAL 112
G +FV NL S+ + + F G V+ ++A D +G+ G+G V++ +A+ A+
Sbjct: 13 GFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNGKSLGYGFVQYDNHESAKCAI 72
Query: 113 EYNGSELLQRPVRLD--LARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDD 170
E +LD L +++ A+ G ++ G + F + K E D
Sbjct: 73 E-----------KLDGMLIKDKKAFV---GYFIRRQERSENGSPK--FTNVYVKNLLETD 116
Query: 171 IKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALE 218
L++ F + G IT + KD E+GN K F +++F +S A+E
Sbjct: 117 TDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVE 163