Miyakogusa Predicted Gene

Lj3g3v3511390.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3511390.2 CUFF.45907.2
         (521 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g074440.1 | pre-mRNA-processing protein 40C | HC | chr4:28...   640   0.0  
Medtr4g074440.2 | pre-mRNA-processing protein 40C | HC | chr4:28...   546   e-155
Medtr1g017520.1 | pre-mRNA-processing 40A-like protein | HC | ch...    66   6e-11
Medtr1g106025.1 | pre-mRNA-processing 40A-like protein | HC | ch...    57   6e-08

>Medtr4g074440.1 | pre-mRNA-processing protein 40C | HC |
           chr4:28340546-28354758 | 20130731
          Length = 959

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/509 (65%), Positives = 351/509 (68%), Gaps = 13/509 (2%)

Query: 1   MSAV-RPPFFQYPASFPGPFPFQARGITPSAVSVPDSYXXXXXXXXXXXXXXXXXXXNHQ 59
           MS V RPPF QYPA+FPGPFPF ARG    AV VPDS                    NH 
Sbjct: 239 MSGVLRPPFHQYPAAFPGPFPFPARGGALPAVPVPDS-QPPGVTPVGAASISAPSSSNHL 297

Query: 60  PVGTAGLQP-------DDKR----NVTKNEDAANDQLDAWTAHKTEAGVVYYYNALTGES 108
             GT+G+Q        DDK      VT+NEDAANDQLDAWTAHKTEAG+VYYYNALTG+S
Sbjct: 298 LRGTSGVQTEVISAHTDDKHKLNATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQS 357

Query: 109 TYDKPAGFKGEPHQVSVQPTPASMVDLPGTDWMLISTSDGKKYYYNNQTKTSCWQIPNEV 168
           TYDKPAGFKGE HQVSVQPTP SMVDLPGTDW L+STSDGKKYYYNN+TKTSCWQIPNEV
Sbjct: 358 TYDKPAGFKGEAHQVSVQPTPVSMVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEV 417

Query: 169 AELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSVQSSPS 228
           AELKKKQD DVTKDH   VPNTNVLS+RGSGMV LNAPAI TGGRDA A KP  VQSSPS
Sbjct: 418 AELKKKQDSDVTKDHPTPVPNTNVLSERGSGMVALNAPAITTGGRDAVASKPFIVQSSPS 477

Query: 229 ALDLIKKKLQDXXXXXXXXXXXXXXXQTGSETNGSKATETTAXXXXXXXXXXXXXXXXXX 288
           ALDLIKKKLQ+               Q GSE+NGSKAT++TA                  
Sbjct: 478 ALDLIKKKLQESGAPVTSSSIPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGD 537

Query: 289 XXVXXXXXXXXXXXXXXXXXXCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSY 348
             V                  CI QFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSY
Sbjct: 538 ANVSDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSY 597

Query: 349 SARRSLFEHYVKTXXXXXXXXXXXXXXXXIEGFKQLLDEASEDINQSTDYQTFRKKWGND 408
           SARRSLFEHYVK                 IEGFKQLLDEASEDI+  TD  TFRKKWGND
Sbjct: 598 SARRSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKKWGND 657

Query: 409 PRFEVLDRKEREHLLNERVLPLXXXXXXXXXXXXXXXXXXXXXMLKEQGDITSNSRWSRV 468
           PRFE LDRKEREHLLNERVLPL                     MLKEQG+IT NSRWSRV
Sbjct: 658 PRFEALDRKEREHLLNERVLPLKKATEEKAQAMRDAAADSFKSMLKEQGEITFNSRWSRV 717

Query: 469 KESLRDDPRYKSVRHEDREVMFNEYISEL 497
           KESLRDDPRYKSV+HEDRE++FNEYISEL
Sbjct: 718 KESLRDDPRYKSVKHEDRELLFNEYISEL 746


>Medtr4g074440.2 | pre-mRNA-processing protein 40C | HC |
           chr4:28340546-28354758 | 20130731
          Length = 711

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/439 (65%), Positives = 302/439 (68%), Gaps = 13/439 (2%)

Query: 1   MSAV-RPPFFQYPASFPGPFPFQARGITPSAVSVPDSYXXXXXXXXXXXXXXXXXXXNHQ 59
           MS V RPPF QYPA+FPGPFPF ARG    AV VPDS                    NH 
Sbjct: 239 MSGVLRPPFHQYPAAFPGPFPFPARGGALPAVPVPDS-QPPGVTPVGAASISAPSSSNHL 297

Query: 60  PVGTAGLQP-------DDKR----NVTKNEDAANDQLDAWTAHKTEAGVVYYYNALTGES 108
             GT+G+Q        DDK      VT+NEDAANDQLDAWTAHKTEAG+VYYYNALTG+S
Sbjct: 298 LRGTSGVQTEVISAHTDDKHKLNATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQS 357

Query: 109 TYDKPAGFKGEPHQVSVQPTPASMVDLPGTDWMLISTSDGKKYYYNNQTKTSCWQIPNEV 168
           TYDKPAGFKGE HQVSVQPTP SMVDLPGTDW L+STSDGKKYYYNN+TKTSCWQIPNEV
Sbjct: 358 TYDKPAGFKGEAHQVSVQPTPVSMVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEV 417

Query: 169 AELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSVQSSPS 228
           AELKKKQD DVTKDH   VPNTNVLS+RGSGMV LNAPAI TGGRDA A KP  VQSSPS
Sbjct: 418 AELKKKQDSDVTKDHPTPVPNTNVLSERGSGMVALNAPAITTGGRDAVASKPFIVQSSPS 477

Query: 229 ALDLIKKKLQDXXXXXXXXXXXXXXXQTGSETNGSKATETTAXXXXXXXXXXXXXXXXXX 288
           ALDLIKKKLQ+               Q GSE+NGSKAT++TA                  
Sbjct: 478 ALDLIKKKLQESGAPVTSSSIPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGD 537

Query: 289 XXVXXXXXXXXXXXXXXXXXXCIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSY 348
             V                  CI QFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSY
Sbjct: 538 ANVSDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSY 597

Query: 349 SARRSLFEHYVKTXXXXXXXXXXXXXXXXIEGFKQLLDEASEDINQSTDYQTFRKKWGND 408
           SARRSLFEHYVK                 IEGFKQLLDEASEDI+  TD  TFRKKWGND
Sbjct: 598 SARRSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKKWGND 657

Query: 409 PRFEVLDRKEREHLLNERV 427
           PRFE LDRKEREHLLNER 
Sbjct: 658 PRFEALDRKEREHLLNERC 676


>Medtr1g017520.1 | pre-mRNA-processing 40A-like protein | HC |
           chr1:4919114-4935894 | 20130731
          Length = 1048

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 2/185 (1%)

Query: 314 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTXXXXXXXXXXXX 373
           FK +L+   V     WE+ + +I+ D R+ A+ +   R+  F  Y+              
Sbjct: 494 FKALLESVNVHSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRIK 553

Query: 374 XXXXIEGFKQLLDEASEDINQSTDYQTFRKKWGNDPRFEVLDR-KEREHLLNERVLPLXX 432
                E F ++L+E  E +  ST +        ND RF  ++R ++RE L    ++ L  
Sbjct: 554 QKKAREEFTKMLEECKE-LTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELER 612

Query: 433 XXXXXXXXXXXXXXXXXXXMLKEQGDITSNSRWSRVKESLRDDPRYKSVRHEDREVMFNE 492
                               L+    +  NS W ++++ L DD RY  +   DR ++F +
Sbjct: 613 KEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRYSLLEKIDRLLVFQD 672

Query: 493 YISEL 497
           YI +L
Sbjct: 673 YIRDL 677



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 23/172 (13%)

Query: 59  QPVGTAGLQPDDKRNVTKNEDAANDQLDAWTAHKTEAGVVYYYNALTGESTYDKPAGFKG 118
           Q  GTA    D   N T N  A++     W  H    G  YYYN  T +S+++KP     
Sbjct: 220 QSSGTAST--DAATNTTSNNSASD-----WQEHTAGDGRRYYYNKSTRQSSWEKPLELM- 271

Query: 119 EPHQVSVQPTPASMVDLPGTDWMLISTSDGKKYYYNNQTKTSCWQIPNEVAELKKKQDGD 178
                    +P    D   T W   ++S+G+KYYYN  T+ S W IP E+ +L ++Q   
Sbjct: 272 ---------SPLERAD-ASTVWKEFTSSEGRKYYYNKVTQQSVWTIPEEL-KLAREQAHK 320

Query: 179 VTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSVQSSPSAL 230
                ++S   T+  S+  +     + P  N    +   L P+ + SSPS++
Sbjct: 321 TISQGMVS--ETSDTSNAAASSAATSTPPANAASSN--TLTPNGLASSPSSV 368


>Medtr1g106025.1 | pre-mRNA-processing 40A-like protein | HC |
           chr1:47946865-47960298 | 20130731
          Length = 1008

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 88  WTAHKTEAGVVYYYNALTGESTYDKPAGFKGEPHQVSVQPTPASMVDLPGTDWMLISTSD 147
           W  H +  G  +YYN  T  S+++KP              TP   VD   T+W   ++ D
Sbjct: 216 WIEHTSATGRRFYYNKRTKLSSWEKPFELM----------TPIERVDA-STNWKEYTSPD 264

Query: 148 GKKYYYNNQTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPA 207
           G+KYYYN  TK S W IP E+ +  ++Q G    +  +  P     +   +  VT   P+
Sbjct: 265 GRKYYYNKITKESKWLIPEEL-KFAREQVGKAMVNGTLPEPLLTPCTQPSANSVTEAMPS 323

Query: 208 INTGGRDAAALKPSSVQSSP 227
            +     A   + S +  +P
Sbjct: 324 ADNSSVPAQGEQTSPISVAP 343