Miyakogusa Predicted Gene

Lj3g3v3510270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3510270.1 tr|C1N998|C1N998_MICPC XRCC2 DNA recombinase
OS=Micromonas pusilla (strain CCMP1545) GN=XRCC2 PE=4
S,32.14,0.000000000003,no description,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; seg,NULL; X-RAY
REPA,gene.g50924.t1.1
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g074200.1 | X-ray repair cross complementing 2 (XRCC2)-lik...   251   3e-67

>Medtr4g074200.1 | X-ray repair cross complementing 2 (XRCC2)-like
           protein, putative | HC | chr4:28233603-28228026 |
           20130731
          Length = 328

 Score =  251 bits (642), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 154/223 (69%), Gaps = 51/223 (22%)

Query: 24  AGNVLELLGPSPSAKTHILIHVSNHFSPSFIAIPQFHSILQFQVAISCILPKHWKGIHYG 83
            GNVLEL+GPSPSAKT ILI                      Q AI+CILPK WKGI+YG
Sbjct: 45  VGNVLELVGPSPSAKTQILI----------------------QTAITCILPKDWKGINYG 82

Query: 84  GFDHAVLFLDLDCRFDILRFSQILIHRITQPRHQGEEAGENYDKALYDMCMTRFLYVRCS 143
           GF+H VLF+DLD RFDI RFSQ+L+HRI +P  +G   G +YDK LYD+CM+RFLYVRCS
Sbjct: 83  GFEHLVLFIDLDSRFDIQRFSQMLVHRIMEPYGEG---GGDYDKKLYDLCMSRFLYVRCS 139

Query: 144 DSFEFLQTLKTLHRRLEREKE-----VHLLMID---------------------RKKLFL 177
           DSF+FLQTLKTL+ RL++EKE     VHLLMID                     RK LFL
Sbjct: 140 DSFQFLQTLKTLNWRLDKEKEVHGVSVHLLMIDSIGAFHWMDRASMLLSLKENSRKTLFL 199

Query: 178 QSVSEAVVQDIKKLLQVHPMLVIATKSVIFGNRYSKAAIEVKG 220
           QSVSEAVVQDIKKLLQVHPMLVI TKSVIF N+ S A+IEVKG
Sbjct: 200 QSVSEAVVQDIKKLLQVHPMLVITTKSVIFWNKSSTASIEVKG 242