Miyakogusa Predicted Gene

Lj3g3v3487860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3487860.1 Non Characterized Hit- tr|I3SAI1|I3SAI1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,87.72,0.000000000002,seg,NULL,CUFF.45881.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g116260.1 | mediator of RNA polymerase II transcription su...   231   2e-61
Medtr3g116310.1 | mediator of RNA polymerase II transcription su...   117   3e-27

>Medtr3g116260.1 | mediator of RNA polymerase II transcription
           subunit 32 | HC | chr3:54379507-54380794 | 20130731
          Length = 148

 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 134/148 (90%), Gaps = 3/148 (2%)

Query: 1   MDSVVDSLNNAYQDFVAAAATVLEAKENASALKTTATDTALENFKQKWELFRVACDQAEE 60
           MDSVVDSLN+AY DF+AAAATVLEA+E ++ALK  ATDTALE+FKQKWELFRVACDQAEE
Sbjct: 1   MDSVVDSLNSAYLDFIAAAATVLEARETSTALKNIATDTALESFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGYVGGKPGQAT-TGLPPISAVRLEQMSKAVRWLVIELQH-- 117
           +VESVKQRIGSECLVDEATG+V GKPGQAT TGLPPISAVRLEQMSKAVRWLVIELQH  
Sbjct: 61  YVESVKQRIGSECLVDEATGHVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 118 XXXXXXANSALSHPSAPFDARFSEDAAQ 145
                 ++SALSHPSAPFDARFSEDAAQ
Sbjct: 121 GGPAGSSSSALSHPSAPFDARFSEDAAQ 148


>Medtr3g116310.1 | mediator of RNA polymerase II transcription
          subunit 32, putative | HC | chr3:54395052-54395324 |
          20130731
          Length = 90

 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 67/78 (85%)

Query: 1  MDSVVDSLNNAYQDFVAAAATVLEAKENASALKTTATDTALENFKQKWELFRVACDQAEE 60
          MDSVVDSL NAYQDFV AAATVLEA   + AL T ATDTAL++FKQKWELF+VACDQAEE
Sbjct: 1  MDSVVDSLKNAYQDFVDAAATVLEASNISGALDTAATDTALKSFKQKWELFKVACDQAEE 60

Query: 61 FVESVKQRIGSECLVDEA 78
          +V+SVKQR+ SE LV +A
Sbjct: 61 YVQSVKQRVESESLVVDA 78