Miyakogusa Predicted Gene

Lj3g3v3430220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3430220.1 tr|D7M1Q8|D7M1Q8_ARALL Protein binding protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_910,31.3,0.000004,RNI-like,NULL; EBF1 (EIN3-BINDING F
BOX PROTEIN 1), UBIQUITIN-PROTEIN LIGASE,NULL; F-BOX/LEUCINE
RIC,NODE_22983_length_1804_cov_27.210644.path2.1
         (189 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g408430.1 | F-box plant-like protein | HC | chr3:1495741-1...   317   5e-87
Medtr4g036815.1 | F-box-like protein | HC | chr4:13456407-134592...   291   2e-79
Medtr1g114610.1 | F-box/LRR protein | HC | chr1:51737951-5174122...    53   1e-07
Medtr4g013255.1 | F-box/LRR protein | HC | chr4:3659491-3663944 ...    49   4e-06

>Medtr3g408430.1 | F-box plant-like protein | HC |
           chr3:1495741-1498734 | 20130731
          Length = 481

 Score =  317 bits (812), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 167/188 (88%)

Query: 1   MLEELIVVDHRMVGGWLAGLSFCENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQK 60
           MLEEL+ VDHRM  GWLAG+SFCENLKTLRF SCK IDGNPG+EEHLG+C ALE LH QK
Sbjct: 290 MLEELVFVDHRMDDGWLAGVSFCENLKTLRFVSCKVIDGNPGLEEHLGYCVALESLHFQK 349

Query: 61  CQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIICRRVELCYLEGCSLLTTEGL 120
           CQLRDKN   AVFSVCRAA+EV+LQDCWGLD+ V  LA++CRRV+L  +EGCSLL+TEGL
Sbjct: 350 CQLRDKNAMSAVFSVCRAAKEVVLQDCWGLDDGVFGLAVVCRRVKLFDIEGCSLLSTEGL 409

Query: 121 ELVIDSWKELQCLRVVSCKNIKDSDISPTLATLFATLKELRWRPDTKHLLSSSLEEISMG 180
           E VI+SWK+L+CLRVVSCKNIKDSDISP LATLF TLKEL+WRPDTKHLL SSL E++MG
Sbjct: 410 ESVIESWKDLECLRVVSCKNIKDSDISPALATLFPTLKELKWRPDTKHLLPSSLREVNMG 469

Query: 181 KKGGKFFR 188
           KKGGKFF+
Sbjct: 470 KKGGKFFK 477


>Medtr4g036815.1 | F-box-like protein | HC | chr4:13456407-13459208
           | 20130731
          Length = 494

 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 158/188 (84%)

Query: 1   MLEELIVVDHRMVGGWLAGLSFCENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQK 60
           MLEEL + DHRM  GW+A +S+CENLKTLR QSCK ID NPG++E+LG CPALERLHL K
Sbjct: 305 MLEELTLCDHRMDDGWMAAVSYCENLKTLRLQSCKKIDLNPGLDEYLGSCPALERLHLLK 364

Query: 61  CQLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIICRRVELCYLEGCSLLTTEGL 120
           CQLRDK    A+FSVCR ARE+I+QDCWG DN +   A +CRRV+L YLEGCSLLTTEGL
Sbjct: 365 CQLRDKKSVSALFSVCRVAREIIIQDCWGFDNGMFGFATVCRRVKLFYLEGCSLLTTEGL 424

Query: 121 ELVIDSWKELQCLRVVSCKNIKDSDISPTLATLFATLKELRWRPDTKHLLSSSLEEISMG 180
           E VI SWKELQ LRVVSCK+IKDS+ISP+LATLF TLKEL+WRPDTK LL SSL  I+MG
Sbjct: 425 ESVIHSWKELQSLRVVSCKHIKDSEISPSLATLFTTLKELKWRPDTKSLLPSSLVGIAMG 484

Query: 181 KKGGKFFR 188
           KKGGKFF+
Sbjct: 485 KKGGKFFK 492


>Medtr1g114610.1 | F-box/LRR protein | HC | chr1:51737951-51741223 |
           20130731
          Length = 416

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 23  CENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQKCQLRDKNGTGAVFSVCRAAREV 82
           C NL+ L  Q C +I  N  M    G C  ++ L + KC      G  ++ + C ++ + 
Sbjct: 185 CRNLEELVLQGCTSITDNGLMSLASG-CQRIKFLDINKCSTVSDVGVSSICNACSSSLKT 243

Query: 83  I-LQDCWGL-DNSVLSLAIICRRVELCYLEGCSLLTTEGLELVIDSWK-ELQCLRVVSCK 139
           + L DC+ + D S+LSLA  C  +E   + GC  ++ + ++L+  + + +L+ LR+  C 
Sbjct: 244 LKLLDCYRIGDKSILSLAKFCDNLETLIIGGCRDVSNDAIKLLATACRNKLKNLRMDWCL 303

Query: 140 NIKDSDISPTLA 151
           N+ DS +S  L+
Sbjct: 304 NVSDSSLSCILS 315


>Medtr4g013255.1 | F-box/LRR protein | HC | chr4:3659491-3663944 |
           20130731
          Length = 669

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 2/160 (1%)

Query: 2   LEELIVVDHRMVGGWLAGLSFCENLKTLRFQSCKAIDGNPGMEEHLGFCPALERLHLQKC 61
           LEEL + D+ +    L  +S C  L +L+   C  I  + G+      C  L+ L L +C
Sbjct: 413 LEELDLTDNEIDDEGLESISRCSRLSSLKLGICLNIT-DKGVANVGMCCSKLKELDLYRC 471

Query: 62  QLRDKNGTGAVFSVCRAAREVILQDCWGLDNSVLSLAIICRRVELCYLEGCSLLTTEGLE 121
                 G  A+ S C + + +    C  + +  L     C  ++   + GC L+T+ GL 
Sbjct: 472 TGVTDLGISAIASGCPSLQMINAAYCTSITDRALFSLSKCVNLQTLEIRGCFLVTSFGLT 531

Query: 122 LVIDSWKELQCLRVVSCKNIKDSDISPTLATLFATLKELR 161
            +  + K+L  L +  C NI DS + P LA     L+++ 
Sbjct: 532 CIAMNCKQLSRLDLKKCYNIDDSGMVP-LAHFSQNLRQIN 570