Miyakogusa Predicted Gene

Lj3g3v3409070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3409070.1 tr|B7G7I3|B7G7I3_PHATC Predicted protein
OS=Phaeodactylum tricornutum (strain CCAP 1055/1)
GN=PHATRD,33.93,8e-18,NicO,Nickel/cobalt transporter, high-affinity;
seg,NULL,CUFF.45799.1
         (366 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g073010.1 | high-affinity nickel-transport family protein ...   398   e-111

>Medtr4g073010.1 | high-affinity nickel-transport family protein |
           HC | chr4:27615276-27617786 | 20130731
          Length = 380

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/303 (71%), Positives = 230/303 (75%), Gaps = 7/303 (2%)

Query: 71  SSDAHIPKSQPLNQITDGDSKNPKAITARTFVLLSALVMLLIXXXXXXXXXXXXXXXXKT 130
           +SD  I +SQP+N+I   D K PK +T +TFV+LSALV+LLI                KT
Sbjct: 78  NSDNPIIESQPVNKINATDFKKPKGLTVQTFVILSALVVLLIQPVFAPAAFATFANAAKT 137

Query: 131 GGPA-------LIRNELVSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGAL 183
            GPA       LIR EL+SSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTR ESA VGAL
Sbjct: 138 SGPATTAVGGKLIRTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRTESALVGAL 197

Query: 184 WGCGHDAGQVIFGLIFLLLKDRLHIEIIQTWGTRVVGLTLLVIGAMGIKEASEVPTPCVA 243
           WGCGHDAGQ+IFGLIFLLLKDRLHIEII+TWGTRVVGLTLLVIGAMGIKEASEV  P VA
Sbjct: 198 WGCGHDAGQLIFGLIFLLLKDRLHIEIIRTWGTRVVGLTLLVIGAMGIKEASEVSAPIVA 257

Query: 244 LENGECDVGVYESLDNPAVGKKKIGFATFATGIVHGLQPDXXXXXXXXXXXXSRVSGAAF 303
           LENGE  VG YESLDNP  GKKKIGFATFATGIVHGLQPD            SRVSGAAF
Sbjct: 258 LENGESSVGAYESLDNPVAGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRVSGAAF 317

Query: 304 LIMFLLGTVVAMGSYTVFIGSCSEALKDRIPRITEKLTWXXXXXXXXXXXXXXXXQFFGF 363
           LIMFL+GTVVAMGSYTVFIGSCS+ALKDR+PRITEKLTW                QFFGF
Sbjct: 318 LIMFLVGTVVAMGSYTVFIGSCSQALKDRVPRITEKLTWASSLIAIALGFAIIISQFFGF 377

Query: 364 SLY 366
           SLY
Sbjct: 378 SLY 380