Miyakogusa Predicted Gene

Lj3g3v3386760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3386760.1 tr|Q2PEQ1|Q2PEQ1_TRIPR Arginine decarboxylase
OS=Trifolium pratense PE=2 SV=1,79.32,0,ARGININE
DECARBOXYLASE,Arginine decarboxylase;
ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE,NULL,CUFF.45779.1
         (710 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g072020.1 | arginine decarboxylase | HC | chr4:27309255-27...  1053   0.0  
Medtr7g096560.1 | pyridoxal-binding domain pyridoxal-dependent d...   151   2e-36
Medtr2g010500.1 | pyridoxal-binding domain pyridoxal-dependent d...   150   4e-36
Medtr4g060430.1 | pyridoxal-binding domain pyridoxal-dependent d...   150   6e-36
Medtr3g113910.1 | pyridoxal-binding domain pyridoxal-dependent d...   146   6e-35

>Medtr4g072020.1 | arginine decarboxylase | HC |
           chr4:27309255-27312345 | 20130731
          Length = 730

 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/733 (73%), Positives = 601/733 (81%), Gaps = 26/733 (3%)

Query: 1   MPAMAC---GAAVLPLPGYTLAGDTDTSXXXXXXXTFS------------ADDTWSPSLS 45
           MPA+AC     A+LP PGY LAGDT T        T              +D  WSPSLS
Sbjct: 1   MPALACVDVTTALLPPPGYALAGDTTTLPPPLTFTTTPGVTAINNNGDEVSDTNWSPSLS 60

Query: 46  SKLYRIDAWGGPYFTVNSAGNVSVRPHGAATLAHQEIDLLKVVKKASDPKCCGGLGLQLP 105
           +KL+++D WG PYF VN+AG++SVRPHG+AT++HQEIDLLKVVKKASDPKCCGGLGLQLP
Sbjct: 61  AKLFKVDGWGFPYFGVNTAGDISVRPHGSATMSHQEIDLLKVVKKASDPKCCGGLGLQLP 120

Query: 106 LVIRFPDALKNRVESLQSAFDCAIQSQGYESSYQGVFPVKCNQDRFVVEDIVKFGSSFRF 165
           L++RFPD LK+R+ESL +AF  AIQ  GYE+ YQGV+PVKCNQDRFVVEDIV+FGS FRF
Sbjct: 121 LLVRFPDVLKDRLESLHAAFVGAIQLHGYENHYQGVYPVKCNQDRFVVEDIVEFGSQFRF 180

Query: 166 GLEAGSKPELLLAMSCLCKGNREAFLVCNGFKDREYITLALVARKLELNTVIVLEQEEEL 225
           GLEAGSKPELLLAMSCLCKGNREAFL+CNGFKD EYI+LAL+ARKL LN+VIVLEQEEEL
Sbjct: 181 GLEAGSKPELLLAMSCLCKGNREAFLICNGFKDSEYISLALIARKLALNSVIVLEQEEEL 240

Query: 226 DIVIEVSNKLCIRPVIGVRAKLRTKHSGHFGGTSGDKGKFGLTTTQILRVVKKLEQVGML 285
           D+V+E+SNKLCIRPVIGVRAKLRTKHSGHFG TSGDKGKFGLTT QILRVVKKLEQ+ ML
Sbjct: 241 DMVVEISNKLCIRPVIGVRAKLRTKHSGHFGSTSGDKGKFGLTTIQILRVVKKLEQLDML 300

Query: 286 DCLQLLHFHIGSQIPHTALLSDGVGEAAQIYCELLRLGAQMRVXXXXXXXXXXXXXSKST 345
           DCLQLLHFHIGSQIP T LL+DGVGEAAQIYCELLRLGAQMRV             SKS+
Sbjct: 301 DCLQLLHFHIGSQIPTTELLADGVGEAAQIYCELLRLGAQMRVLYIGGGLGIDYDGSKSS 360

Query: 346 DSDISVGYSLEEYAAAVVHTVKNVCDSRNVRHPVICSESGRAIVSHHSVLIFEAVGASGN 405
           DSD+SV Y LEEYAAAVVH VK VCD RNV+HPVICSESGRAIVSHHSVLIFEA+GAS  
Sbjct: 361 DSDLSVAYGLEEYAAAVVHAVKYVCDRRNVKHPVICSESGRAIVSHHSVLIFEAIGAS-- 418

Query: 406 RGRDSALSTIELQCLGEGLSEEALADYQNMSSATIRGEYETCLRYAEQFKKRCVEQFKQG 465
                +LS+I LQ LGEGLSEEALADYQN+S+AT+ G++E CL Y +QFKK CVEQFKQG
Sbjct: 419 SKSAPSLSSIGLQYLGEGLSEEALADYQNISAATLHGDHEACLLYTDQFKKHCVEQFKQG 478

Query: 466 SLGMEQLAAVDGLCDLITEAIGVNDPVQKYHMNLSVFTSIPDFWAFEQLFPIVPIHRLDE 525
           +LG+EQLAAVDGLCDLITE IGV D V+KYHMNLSVFTSIPDFW+ +QLFPI+PIHRLDE
Sbjct: 479 TLGIEQLAAVDGLCDLITETIGVKDQVRKYHMNLSVFTSIPDFWSIDQLFPIIPIHRLDE 538

Query: 526 KPTAKGILSDLTCDSDGKIDKFIGGESSLPLHELE--DGHYYLGMFLGGAYEEALGGVHN 583
           KPTA+GILSDLTCDSDGKIDKFIGGESSLPLHELE   G YYLGMFLGGAYEEALGG+HN
Sbjct: 539 KPTARGILSDLTCDSDGKIDKFIGGESSLPLHELEGHGGGYYLGMFLGGAYEEALGGLHN 598

Query: 584 LFGGPSVVRVVQSDGPHGFAVTRAVAGPSCGDVLRAMQHQPELMFETLKHRVLEF----- 638
           LFGGPSVVRV+QSDGPHGFAVTRAVAGPS  DVLR MQH+P+LMFETLKHR LEF     
Sbjct: 599 LFGGPSVVRVLQSDGPHGFAVTRAVAGPSSADVLRVMQHEPQLMFETLKHRALEFCGQHD 658

Query: 639 DQDEVNAAAVVASLARSFDKMPYLVAAKPCCFNAVSNG-GFYHCXXXXXXXXXXXXXXXX 697
           D   V AA +   LARSFD MPYLV++  CC NAV+N  GFY+C                
Sbjct: 659 DDSVVGAAGLANCLARSFDNMPYLVSSSACCLNAVTNNDGFYYC-SGDDFSADSASAATS 717

Query: 698 XXXEEEHWSYCCA 710
              E+EHWSYCCA
Sbjct: 718 VAGEDEHWSYCCA 730


>Medtr7g096560.1 | pyridoxal-binding domain pyridoxal-dependent
           decarboxylase | LC | chr7:38743177-38743754 | 20130731
          Length = 146

 Score =  151 bits (382), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/98 (74%), Positives = 80/98 (81%), Gaps = 6/98 (6%)

Query: 141 VFPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNREAFLVCNGFKDRE 200
           V P KCNQD+F VEDIV+FG  FR GLEAGSKPELLLA+SCLCKGNREAFLVCNGFKD  
Sbjct: 52  VVPSKCNQDKFFVEDIVEFGWQFRLGLEAGSKPELLLALSCLCKGNREAFLVCNGFKDN- 110

Query: 201 YITLALVARKLELNTVIVLEQEEELDIVIEVSNKLCIR 238
                LV RKL LN VI LEQEEELD+V+E+SNK+ IR
Sbjct: 111 -----LVGRKLALNGVIALEQEEELDMVVEISNKIYIR 143


>Medtr2g010500.1 | pyridoxal-binding domain pyridoxal-dependent
           decarboxylase | LC | chr2:2411249-2411967 | 20130731
          Length = 154

 Score =  150 bits (380), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/98 (74%), Positives = 80/98 (81%), Gaps = 6/98 (6%)

Query: 141 VFPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNREAFLVCNGFKDRE 200
           V P KCNQD+F VEDIV+FG  FR GLEAGSKPELLLA+SCLCKGNREAFLVCNGFKD  
Sbjct: 43  VVPSKCNQDKFFVEDIVEFGWQFRLGLEAGSKPELLLALSCLCKGNREAFLVCNGFKDN- 101

Query: 201 YITLALVARKLELNTVIVLEQEEELDIVIEVSNKLCIR 238
                LV RKL LN VI LEQEEEL++V+E+SNKL IR
Sbjct: 102 -----LVGRKLALNGVIALEQEEELNMVVEISNKLYIR 134


>Medtr4g060430.1 | pyridoxal-binding domain pyridoxal-dependent
           decarboxylase | LC | chr4:22205559-22204575 | 20130731
          Length = 142

 Score =  150 bits (378), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/98 (74%), Positives = 80/98 (81%), Gaps = 6/98 (6%)

Query: 141 VFPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNREAFLVCNGFKDRE 200
           V P KCNQD+F VEDIV+FG  FR GLEAGSKPELLLA+SCLCKGNREAFLVCNGFKD  
Sbjct: 31  VVPSKCNQDKFFVEDIVEFGWQFRLGLEAGSKPELLLALSCLCKGNREAFLVCNGFKDN- 89

Query: 201 YITLALVARKLELNTVIVLEQEEELDIVIEVSNKLCIR 238
                LV RKL LN VI LEQEEEL++V+E+SNKL IR
Sbjct: 90  -----LVGRKLALNGVIALEQEEELNMVVEISNKLYIR 122


>Medtr3g113910.1 | pyridoxal-binding domain pyridoxal-dependent
           decarboxylase | LC | chr3:53123946-53121823 | 20130731
          Length = 236

 Score =  146 bits (369), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 80/98 (81%), Gaps = 6/98 (6%)

Query: 141 VFPVKCNQDRFVVEDIVKFGSSFRFGLEAGSKPELLLAMSCLCKGNREAFLVCNGFKDRE 200
           V P KCNQD+F VEDIV+FG  FR GLEAGSKPELLLA+SCLCKGNREAFLVCNGFKD  
Sbjct: 125 VVPSKCNQDKFFVEDIVEFGWQFRLGLEAGSKPELLLALSCLCKGNREAFLVCNGFKDN- 183

Query: 201 YITLALVARKLELNTVIVLEQEEELDIVIEVSNKLCIR 238
                LV RKL LN VI LEQEEEL++V+E+SNKL IR
Sbjct: 184 -----LVGRKLALNGVIALEQEEELNMVVEISNKLYIR 216