Miyakogusa Predicted Gene

Lj3g3v3375930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3375930.1 tr|Q8S8M3|Q8S8M3_ARATH At2g38780 OS=Arabidopsis
thaliana GN=At2g38780 PE=2 SV=1,52.08,2e-19,
,NODE_59384_length_592_cov_28.959459.path2.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g071010.1 | transmembrane protein, putative | HC | chr4:26...   148   9e-37

>Medtr4g071010.1 | transmembrane protein, putative | HC |
           chr4:26746895-26750545 | 20130731
          Length = 442

 Score =  148 bits (374), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 85/98 (86%), Gaps = 1/98 (1%)

Query: 1   MYEKLKSHPNAKVSKKARQFSYSFQAMEMMKFTAGSSSYSKNTYYQNYFDAFIENKSNYP 60
           MYEKL+SHP+ KV KKAR F YSFQAMEMMK    SS YSKNT+YQ+YFDAFIENKSNYP
Sbjct: 346 MYEKLQSHPSVKVGKKARHFMYSFQAMEMMKVRTRSSRYSKNTFYQSYFDAFIENKSNYP 405

Query: 61  LQDGVAQENAMNLQVLPYIIFMVSPIFVILLIALQKRI 98
           ++D VAQE+ +N QVL YI+F++SPIFV+LL+A+QKRI
Sbjct: 406 VKDEVAQESDLN-QVLLYIVFLISPIFVVLLLAVQKRI 442