Miyakogusa Predicted Gene

Lj3g3v3374680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3374680.1 Non Characterized Hit- tr|D8U3B6|D8U3B6_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,54,3e-19,SUBFAMILY NOT NAMED,NULL; MICROFIBRIL-ASSOCIATED
PROTEIN,Micro-fibrillar-associated protein 1, C-ter,CUFF.45726.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g083140.1 | microfibrillar-associated-like protein | HC | ...   116   5e-27

>Medtr8g083140.1 | microfibrillar-associated-like protein | HC |
           chr8:35121606-35118300 | 20130731
          Length = 436

 Score =  116 bits (290), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 67/96 (69%), Gaps = 13/96 (13%)

Query: 17  KKKWRFMQRYYHCGAFFQDQ---------LDTIMLRDFSAPTGQDKMDKTILPSVMQVKR 67
           K+KWRFMQ+YYH GAFFQ            D I  RDFSAPTG+DKMDKTILP VMQVK 
Sbjct: 317 KQKWRFMQKYYHKGAFFQSNSDDRAATVGTDNIFTRDFSAPTGEDKMDKTILPKVMQVKH 376

Query: 68  FGLRGRSKWTHLINEDTTHHRTNPSWTCNHLHPLQS 103
           FG  GR+KW+HL+NEDTT    NP WT N   PL++
Sbjct: 377 FGRSGRTKWSHLVNEDTTDW-NNP-WTYN--DPLRA 408