Miyakogusa Predicted Gene

Lj3g3v3360960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3360960.1 Non Characterized Hit- tr|D7LBF2|D7LBF2_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,88,3e-19,seg,NULL; PROTEIN RER1,Retrieval of early ER protein
Rer1; Rer1,Retrieval of early ER protein
Rer1,NODE_16275_length_817_cov_327.631592.path2.1
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731     90   5e-19
Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731     90   5e-19
Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731     82   9e-17
Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731       79   1e-15
Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731       78   2e-15

>Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731
          Length = 197

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/45 (91%), Positives = 44/45 (97%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 45
           MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIKY+YIP +L
Sbjct: 132 MTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSL 176


>Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731
          Length = 197

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/45 (91%), Positives = 44/45 (97%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 45
           MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIKY+YIP +L
Sbjct: 132 MTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSL 176


>Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731
          Length = 192

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 40/44 (90%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTFFS FDVPVFWPILL YW+VLF LTMRRQIAHMIKYKY+P +
Sbjct: 128 MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFS 171


>Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731
          Length = 208

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 39/44 (88%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTF S FD+PVFWPILL YW+VLF LTMRRQI+HMIKY+Y+P N
Sbjct: 143 MTFSSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFN 186


>Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731
          Length = 192

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 39/44 (88%)

Query: 1   MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 44
           MTF S FD+PVFWPILL YW+VLF LTMRRQI+HMIKY+Y+P N
Sbjct: 143 MTFSSAFDIPVFWPILLFYWVVLFSLTMRRQISHMIKYRYVPFN 186