Miyakogusa Predicted Gene

Lj3g3v3338290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3338290.1 Non Characterized Hit- tr|I1LJH0|I1LJH0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10455
PE,83.01,0,ResB,ResB-like domain; seg,NULL; CytC_Ccs1,Cytochrome c
biogenesis protein Ccs1/CcsB; FAMILY NOT NAM,CUFF.45638.1
         (562 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g069080.1 | cytochrome C biogenesis protein Ccs1 | HC | ch...   864   0.0  

>Medtr4g069080.1 | cytochrome C biogenesis protein Ccs1 | HC |
           chr4:25953479-25949059 | 20130731
          Length = 549

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/548 (77%), Positives = 473/548 (86%), Gaps = 11/548 (2%)

Query: 16  NTHFLKVPNYHVSFKFKPFPHNNHGAKRAHTFSFTTISCKLKSSQDIKNKEGKSVSQKIV 75
           N   LKVP +H  FK+     N   + R +TFSFT ISC LK+    K K    +SQKIV
Sbjct: 12  NQCLLKVPTFHPLFKY-----NRIHSHRHNTFSFT-ISCNLKN----KGKNNSLLSQKIV 61

Query: 76  LSEASPPPLTEDDXXXXXXXXXXXXKNRGGIFWVAKRLSRKVLQILSNLPLAIGEMFVIA 135
           LSE+SPPPLT+D+            KN+ G + V K+LS+KVLQILSNLPLAIGEMF+IA
Sbjct: 62  LSESSPPPLTQDNDDINNGNVPASSKNQKGPYGVVKKLSKKVLQILSNLPLAIGEMFIIA 121

Query: 136 FLMGLGTFIDQGESPDHYFQKYPEDHPVLGFFTWRWVLALGFDHMFSSPIFXXXXXXXXX 195
           FLMGLGTFIDQGE P+ YFQ YPEDHPVLGFFTWRW+  LGFDHM+S+PIF         
Sbjct: 122 FLMGLGTFIDQGEKPEFYFQNYPEDHPVLGFFTWRWIFFLGFDHMYSAPIFLSMLALLGA 181

Query: 196 XXXXCTYTTQIPLIKVARRWSFLHSAEAIRKQEFSESLPRASIEDVGTLLMGAGYEVFLK 255
               CTYTTQ+PLIKV++RWSF+HSAEAIRKQEFSESLPRASI+DVGT+LMGAGYEVFLK
Sbjct: 182 SLIACTYTTQLPLIKVSKRWSFIHSAEAIRKQEFSESLPRASIQDVGTILMGAGYEVFLK 241

Query: 256 GPSLYAFRGLAGRLAPVGVHIAMILIMVGGTYSASGSFRGSVNVPQGLNFVVGDVLSPSG 315
           GP+LYAFRGLAGRLAPVGVHIA++LIM GGT SA+GSF+GSV VPQGLNFVVGDVL P+G
Sbjct: 242 GPTLYAFRGLAGRLAPVGVHIALLLIMGGGTLSAAGSFKGSVTVPQGLNFVVGDVLGPTG 301

Query: 316 FLSTPTEDFNTEVHVNRFYMDYYDSGEVSQFHTDLSLLNMDGKEVMRKTISVNDPLRYGG 375
           FLS PT+ FNTE+HVNRF MDYY+SGEVSQFHTDLSLL+MDGKEVMRKTISVNDPLRY G
Sbjct: 302 FLSLPTDAFNTEIHVNRFSMDYYESGEVSQFHTDLSLLDMDGKEVMRKTISVNDPLRYDG 361

Query: 376 VTIYQTDWSISALQILKDNKGPYNLAMAPLKINGDKKLYGTFLPVGDINSPDVKGISMLA 435
           +TIYQTDWSISALQILKDN+GPYNLAMAPLKINGDKKLYGTFLPVGD+NSPDVKGISMLA
Sbjct: 362 ITIYQTDWSISALQILKDNEGPYNLAMAPLKINGDKKLYGTFLPVGDVNSPDVKGISMLA 421

Query: 436 RDLQSIVLYDKEGKFAGVRRPSSKLPINIDGSEIIVVDAIGSSGLDLKTDPGVPIVYAGF 495
           RDLQSIVLYDKEGKFAGVRRP+SKLPINIDGSEI+VVDAIGSSGLDLKTDPGVP+VYAGF
Sbjct: 422 RDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVVVDAIGSSGLDLKTDPGVPVVYAGF 481

Query: 496 GALMLTTCISYLSHSQIWALQDGTTVVIGGKTNRAKMEFPEEMNRLLDKVPELVK-SSLS 554
           GALMLTTCISYLSHSQIWALQDGTTVVIGGKTNR+K+EFP+EMN LLDK+PE+V+ SSLS
Sbjct: 482 GALMLTTCISYLSHSQIWALQDGTTVVIGGKTNRSKLEFPDEMNLLLDKIPEIVESSSLS 541

Query: 555 NQGGSISG 562
            Q  S+ G
Sbjct: 542 KQTDSMVG 549