Miyakogusa Predicted Gene

Lj3g3v3338280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3338280.1 Non Characterized Hit- tr|I3S4J9|I3S4J9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.21,0,LYTB,LytB
protein; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; ispH_lytB:
4-hydroxy-3-methylbut,CUFF.45648.1
         (447 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g069030.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reduc...   815   0.0  
Medtr4g069070.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reduc...   758   0.0  
Medtr1g090787.1 | LYTB protein | LC | chr1:40804767-40805552 | 2...   213   3e-55

>Medtr4g069030.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase | HC | chr4:25923352-25926951 | 20130731
          Length = 449

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/448 (87%), Positives = 418/448 (93%), Gaps = 6/448 (1%)

Query: 1   MAFCTNI-LRLPTARNDIVLPESVTRTPCRKLFSVVRCSSADPDFDAKVFRKNLTRSANY 59
           MAFC+N+ LRLP  R D+  P   T   CRKLFSV RCS AD DFD K+FRKNLTRS NY
Sbjct: 1   MAFCSNLCLRLPATRIDVPSP---TTFRCRKLFSV-RCS-ADADFDPKLFRKNLTRSENY 55

Query: 60  NRKGFGHKEETLKLMNREYTSDIIKTLKENGYEYTWGNVTVMLAEAYGFCWGVERAVQIA 119
           NRKGFGHKEETLKLMNREYTSD+IKTLKENG+EYTWGNVTVMLAE++GFCWGVERAVQIA
Sbjct: 56  NRKGFGHKEETLKLMNREYTSDVIKTLKENGFEYTWGNVTVMLAESFGFCWGVERAVQIA 115

Query: 120 YEARKQFPDEKIWLTNEIIHNPTVNKRLEDMQVQNIPLEDGKKQFDVVNKGDVVMFPAFG 179
           YEARKQFPDEKIW+TNEIIHNPTVNKRLEDM+VQNIP+ +GKKQF+VVNKGDVV+ PAFG
Sbjct: 116 YEARKQFPDEKIWITNEIIHNPTVNKRLEDMEVQNIPIGEGKKQFEVVNKGDVVILPAFG 175

Query: 180 AGVDEMLTLSEKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETIATASFAA 239
           A VDEMLTLSEKNVQIVDTTCPWVSKVWN VEKHKKGDYTSIIHGKYAHEET+ATASFA 
Sbjct: 176 AAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATASFAG 235

Query: 240 KYIIVKNMAEAEYVCDYILGGELNGSSSTKEALLEKFKFAVSKGFDPDTDLVKLGIANQT 299
           KYIIVKNMAEAEYVCDYILGGE NGSSST+EA  EKFKFA+SKGFDPD+DL+KLGIANQT
Sbjct: 236 KYIIVKNMAEAEYVCDYILGGEFNGSSSTREAFFEKFKFALSKGFDPDSDLIKLGIANQT 295

Query: 300 TMLKGETEDIGKLVERTMMRKFGVENVNEHFISFNTICDATQERQDAMYKLVERDMDLML 359
           TMLKGETE+IG+LVERTMMRK+GVENV EHFISFNTICDATQERQDA+YKLVE+DMDLML
Sbjct: 296 TMLKGETEEIGRLVERTMMRKYGVENVTEHFISFNTICDATQERQDAIYKLVEKDMDLML 355

Query: 360 VVGGWNSSNTSHLQEIAEERRIPSYWIDTEQRIGPGNRIAYKLMHGELVEKENFLPQGPI 419
           VVGGWNSSNTSHLQEIAEER IPSYWID+EQRIGPGNRIAYKL HGELVEKENFLP+GP+
Sbjct: 356 VVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENFLPKGPL 415

Query: 420 TIGITSGASTPDKVVEDVLIKVFDLKRE 447
            IG+TSGASTPDKVVED LIKVFDLKRE
Sbjct: 416 RIGVTSGASTPDKVVEDALIKVFDLKRE 443


>Medtr4g069070.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase | HC | chr4:25944704-25948830 | 20130731
          Length = 448

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/447 (81%), Positives = 401/447 (89%), Gaps = 5/447 (1%)

Query: 1   MAFCTNILRLPTARNDIVLPESVTRTPCRKLFSVVRCSSADPDFDAKVFRKNLTRSANYN 60
           MAF  N  R PT R D+  P+   R  CRK+F V RCS AD DFD KVFRKNL R  NYN
Sbjct: 1   MAFHANFCRFPTTRIDVPSPD---RIRCRKVFPV-RCS-ADSDFDPKVFRKNLARGENYN 55

Query: 61  RKGFGHKEETLKLMNREYTSDIIKTLKENGYEYTWGNVTVMLAEAYGFCWGVERAVQIAY 120
           RKGFG KEETLKLMN EYTS+II+TLK+N  EYTWGNVTVMLAEA+GFCWGVE+AVQIAY
Sbjct: 56  RKGFGRKEETLKLMNHEYTSEIIETLKKNRNEYTWGNVTVMLAEAFGFCWGVEKAVQIAY 115

Query: 121 EARKQFPDEKIWLTNEIIHNPTVNKRLEDMQVQNIPLEDGKKQFDVVNKGDVVMFPAFGA 180
           EARKQFP+ KIW+TN+IIHNPTVNKRLE+M+V+NIP+ +GKKQF+VVNKGDVV+ PAFGA
Sbjct: 116 EARKQFPNHKIWITNQIIHNPTVNKRLEEMKVENIPIAEGKKQFEVVNKGDVVILPAFGA 175

Query: 181 GVDEMLTLSEKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETIATASFAAK 240
            VDEMLTLSEK VQIVDTTC WVSKVWN VEKHKKGDYTSIIHGKYAHEET+ATASFA K
Sbjct: 176 AVDEMLTLSEKKVQIVDTTCEWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATASFAGK 235

Query: 241 YIIVKNMAEAEYVCDYILGGELNGSSSTKEALLEKFKFAVSKGFDPDTDLVKLGIANQTT 300
           YIIVKNM EA+YVCDYILGGELNG SST+EA  EKFKFAVSKGFDPD DL+KLGIANQTT
Sbjct: 236 YIIVKNMGEAKYVCDYILGGELNGYSSTREAFFEKFKFAVSKGFDPDNDLIKLGIANQTT 295

Query: 301 MLKGETEDIGKLVERTMMRKFGVENVNEHFISFNTICDATQERQDAMYKLVERDMDLMLV 360
           MLKGETE+IGKLV+ TMMRKFGVENVNEHFISFNTIC+ATQ RQDA+YKLV++DMDLMLV
Sbjct: 296 MLKGETEEIGKLVQWTMMRKFGVENVNEHFISFNTICNATQVRQDAIYKLVDKDMDLMLV 355

Query: 361 VGGWNSSNTSHLQEIAEERRIPSYWIDTEQRIGPGNRIAYKLMHGELVEKENFLPQGPIT 420
           VGGWNSSNTSHLQEIAEER IPSYWID+EQRIGPGN+IAYKL HGELVEKEN+LP+GP+ 
Sbjct: 356 VGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNKIAYKLNHGELVEKENWLPKGPLK 415

Query: 421 IGITSGASTPDKVVEDVLIKVFDLKRE 447
           IG+TSGASTPDKVV D LIKVF+LK+E
Sbjct: 416 IGVTSGASTPDKVVGDALIKVFNLKKE 442


>Medtr1g090787.1 | LYTB protein | LC | chr1:40804767-40805552 |
           20130731
          Length = 261

 Score =  213 bits (542), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 118/136 (86%)

Query: 116 VQIAYEARKQFPDEKIWLTNEIIHNPTVNKRLEDMQVQNIPLEDGKKQFDVVNKGDVVMF 175
           VQIAYE  +QFP+ KI +TNEIIHN  VNK LE+M+V+NIP+ +GKKQF+ VNKGDVVM 
Sbjct: 92  VQIAYEVIEQFPNHKIGITNEIIHNTIVNKCLEEMKVENIPIAEGKKQFEFVNKGDVVML 151

Query: 176 PAFGAGVDEMLTLSEKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETIATA 235
           PAFGA VDEMLTLSEKNVQIVDTTC WVS VWN VEKHK+ DYTSIIHGKYA ++T+AT 
Sbjct: 152 PAFGAVVDEMLTLSEKNVQIVDTTCEWVSTVWNIVEKHKREDYTSIIHGKYAQKKTVATM 211

Query: 236 SFAAKYIIVKNMAEAE 251
           SFA KY+I+KNMA+A+
Sbjct: 212 SFAEKYVIMKNMADAK 227