Miyakogusa Predicted Gene

Lj3g3v3337430.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3337430.2 tr|A9TTB7|A9TTB7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_171835,50,6e-18,seg,NULL,CUFF.45612.2
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g079890.1 | hypothetical protein | HC | chr8:34287064-3428...   188   3e-48
Medtr8g028015.1 | hypothetical protein | HC | chr8:10356254-1035...   130   7e-31

>Medtr8g079890.1 | hypothetical protein | HC |
           chr8:34287064-34283126 | 20130731
          Length = 190

 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/197 (52%), Positives = 129/197 (65%), Gaps = 21/197 (10%)

Query: 1   MDRKGKGFGKGNRELGGARDLISQYRLWPYYEIFCKKSLPLSISETPYLRNVVGDTNIRK 60
           MD +GK FG+G RELGGA DL+SQY+LWPYYE FCK+SLPLSISET YLRNVVGDT I+K
Sbjct: 1   MDLEGKNFGRGTRELGGAHDLVSQYKLWPYYEFFCKRSLPLSISETHYLRNVVGDTKIKK 60

Query: 61  GEGMELSQLCQNTYVSEKKARLHPFELDVLSEAFHM-----------KKGLPSSVPKSEN 109
           GEG+EL QLC+NT ++EKK  L PF+L+VLSEAF +           KKGL ++VP S N
Sbjct: 61  GEGVELDQLCKNTKMNEKKPCLSPFDLNVLSEAFRLREMDPNHLSCAKKGLLNAVPNSAN 120

Query: 110 QSRXXXXXXXXXXXXXXXXXXXXXXXLHQVTDG--IANNRIKHHDSHTLQLKNRQEKKRK 167
           QSR                       L ++ +G  + NN  +H +S    L N+Q+KKR+
Sbjct: 121 QSR-------ENEKKNKKHGKHEKHKLLRIKNGSCVDNNTTRHSNSQPSPLTNQQDKKRR 173

Query: 168 AETSNDP-VSKRVNMRQ 183
           AETS +P V KR N RQ
Sbjct: 174 AETSYNPSVCKRSNTRQ 190


>Medtr8g028015.1 | hypothetical protein | HC |
           chr8:10356254-10354404 | 20130731
          Length = 218

 Score =  130 bits (327), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 81/109 (74%), Gaps = 1/109 (0%)

Query: 1   MDRKGKGFGKGNRELGGARDLISQYRLWPYYEIFCKKSLPLSISETPYLRNVVGDTNIRK 60
           MD +GK FG G REL GA DLIS ++L P+YE FCK+ LP+SI++T YL +VVGDT +RK
Sbjct: 1   MDPEGKKFGGGPRELTGAVDLISHFKLIPHYEFFCKRPLPVSIADTHYLHSVVGDTEVRK 60

Query: 61  GEGMELSQLCQNTYVS-EKKARLHPFELDVLSEAFHMKKGLPSSVPKSE 108
           G+GM+L +L QNT  S E  AR+ PF+LD+L E+F +++  P  +P +E
Sbjct: 61  GDGMQLDELIQNTSFSRETSARIQPFDLDILKESFQLRETAPIDLPAAE 109