Miyakogusa Predicted Gene
- Lj3g3v3315960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3315960.1 Non Characterized Hit- tr|I1LJN5|I1LJN5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.28433
PE,70.07,0,FPA,NULL; RNA RECOGNITION MOTIF-CONTAINING,NULL; seg,NULL;
RNA-binding domain, RBD,NULL; no descript,CUFF.45555.1
(992 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 1335 0.0
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 1335 0.0
Medtr3g079310.1 | RNA recognition motif (RRM) containing protein... 156 9e-38
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 73 1e-12
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 73 2e-12
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 73 2e-12
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 73 2e-12
Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like pro... 72 2e-12
Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like pro... 72 2e-12
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 72 2e-12
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 69 3e-11
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 5e-11
Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like pro... 67 7e-11
Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like pro... 67 7e-11
Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like pro... 67 7e-11
Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like pro... 67 7e-11
Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like pro... 67 8e-11
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 67 8e-11
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 67 1e-10
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 2e-10
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 2e-10
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 66 2e-10
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 66 2e-10
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 65 2e-10
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 65 5e-10
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 63 1e-09
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 63 1e-09
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 3e-09
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 61 5e-09
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 61 5e-09
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 1e-08
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 1e-08
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 1e-08
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 2e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 57 8e-08
Medtr8g100160.1 | RNA recognition motif 1 in plant MEI2-like pro... 57 1e-07
Medtr8g100160.2 | RNA recognition motif 1 in plant MEI2-like pro... 57 1e-07
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 56 2e-07
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 55 4e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 55 5e-07
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 1335 bits (3455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/971 (70%), Positives = 757/971 (77%), Gaps = 66/971 (6%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRSYAFVFFKRVDDAKAAKNALQGFS 82
NNL+V NL+PDVTDSDLMDLF QYGALDSVT Y++R+YAFVFFKR+DDAKAAKNALQGF+
Sbjct: 27 NNLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSARNYAFVFFKRIDDAKAAKNALQGFN 86
Query: 83 LRGVSLKIEFAFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKFFRDRNTACVEF 142
RG SL+IEFA PAK CKQLWVGGISPAVT+EDLEA+F KFGK+EDFKFFRDRNTACVEF
Sbjct: 87 FRGNSLRIEFARPAKTCKQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNTACVEF 146
Query: 143 FNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQFQGKSMGPTDSYSGQKR 202
FNLDDA QA+KIMNG+ IGG+ IRVDFLRSN KRDQ DYGQFQGKS GP+DSYSG KR
Sbjct: 147 FNLDDAIQAMKIMNGKHIGGENIRVDFLRSNYAKRDQGLDYGQFQGKSFGPSDSYSGHKR 206
Query: 203 PLLSPPLMGRKGDHIPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIRSFPSKNHALVE 262
PL S PLM RKGD P+NILWIGYPP VQIDEQMLHNAMILFGEIERI+S PS+N + VE
Sbjct: 207 PLNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSVPSRNFSFVE 266
Query: 263 FRSVDEARRAKEGLQGRLFNDPRITITYSSSDPVPGKDYPTFYPGSNGPRPDMFLNEHPF 322
FRSVDEARRAKEGLQGRLFNDP ITI YS++D V GKDYP FYPGSNGPRPD+FLNEHP+
Sbjct: 267 FRSVDEARRAKEGLQGRLFNDPHITINYSNADQVQGKDYPGFYPGSNGPRPDLFLNEHPY 326
Query: 323 QPFQMDLIGHNRPMVPNSFPGQLPHSGIVGPNIPMRPFGAQGGLDSGVSGPEFNDISSLH 382
+P QMDL GHNRPM+PNSFPGQLP G VGPNIPMRPFG GG +S VSGPEFN+ S+LH
Sbjct: 327 RPAQMDLFGHNRPMIPNSFPGQLPSGGNVGPNIPMRPFGPNGGPESVVSGPEFNENSTLH 386
Query: 383 QFQDGSSMSKIGPNWKRPSPPAQGILPSPTPGVRLPTRSASGAWDVLDINHIPRDPKRSR 442
+ GPNWKRPSPPAQG+L SP PG RLP RS+SGAWDVLDINHIPRD KRSR
Sbjct: 387 K----------GPNWKRPSPPAQGLLSSPVPGARLPARSSSGAWDVLDINHIPRDSKRSR 436
Query: 443 IDGTPLRNIDDRGFALEQQYGNNPVIDGGGSDPYMNMQGKSHIGPVSTRITAGVHGSGQP 502
IDG L N DPY G+ +G STRIT GVH QP
Sbjct: 437 IDGA-LPN----------------------DDPYA---GRGILGSASTRITGGVHAV-QP 469
Query: 503 DIDHIWRGVLAKGGTPVCRARCVPVGKGIGAELPDVVDCSARTGLDILSKHYADAIGFEI 562
DHIWRG++AKGGTPVCRARC+PVGKGIG ELP+VVDCSARTGLD L+ HYADAI FEI
Sbjct: 470 --DHIWRGLIAKGGTPVCRARCIPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEI 527
Query: 563 VFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFADNNTLFLVPPSDFLTDILKVTGPERLY 622
VFFLPDSE DF SYTEFLRYL AKNRAGVAKF +N TLFLVPPSDFLTD+LKVTGPERLY
Sbjct: 528 VFFLPDSENDFGSYTEFLRYLGAKNRAGVAKF-ENTTLFLVPPSDFLTDVLKVTGPERLY 586
Query: 623 GVVLKFPSLPNSTPMQESSHLPIPSTQYMQQIPPSQAEYGMIPSKEERFLQADYNRSLHD 682
GVVLKF + + P+ +SSHLP+PS QYMQQ+PPSQAEY M P+KEE+ L +YNR LH+
Sbjct: 587 GVVLKFAPVQSGVPVHQSSHLPVPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHE 646
Query: 683 DSKLSAKPIA--TGGPPPVQSMPSEYAPNTTVSGSQAAVGLTPELIATLASFLPANAQSS 740
DSKL AK + TGGP VQ S+YA NT SGSQA V LTPELIATLASFLP N QS
Sbjct: 647 DSKLPAKQVYPPTGGPSSVQPAASDYALNTAASGSQAGVALTPELIATLASFLPTNVQSP 706
Query: 741 APDGANPAGGSLNVKPPFPPSAPNDGNQSHLWKQDHQIADQSIYPPPQFRSMYNFNNGHY 800
A DGA GS VKPPFPP APNDGNQS +WKQDHQIADQSI+P QFR+MYN +N H+
Sbjct: 707 AIDGAKSGAGSSTVKPPFPPVAPNDGNQSQIWKQDHQIADQSIHPSQQFRNMYNSHNAHH 766
Query: 801 QSYPPAPAPGHPAQLVSGSSHIQDSAVGMQQPGAVSSTYMSNFATPSHNGQSAVSSHVNQ 860
Q YPPA APGH AQ SGSSHIQD+AV QQ G VSS +SNF TP+ +GQ A S H +
Sbjct: 767 QPYPPASAPGHTAQAFSGSSHIQDNAVNQQQQGVVSSRLVSNFVTPTQSGQVAASPHFSH 826
Query: 861 QYQVDASPSTQRGFGVAQGTDASVLYNSQAFQQPNSNS--------------------QA 900
QYQ + P+TQ+GF G+D SVLYNSQAFQQPN+N Q
Sbjct: 827 QYQAEVPPNTQKGF---PGSDVSVLYNSQAFQQPNNNHHPFQQPNNNPQHFQQSNNNPQP 883
Query: 901 FQPPNNSMSYSNQVNSANPSQQPTGIPYAVGQINSDAPNQQLPVFGAGQGTSEVEADKNQ 960
FQ PNNS++ S+QVNSANP QP + Y Q+NS+ P QQ P FG GQG E+EADKNQ
Sbjct: 884 FQQPNNSIALSSQVNSANPQHQPV-MQYTADQVNSNPPIQQHPAFGVGQGPPELEADKNQ 942
Query: 961 RYQSTLQFAAN 971
RYQSTLQFAAN
Sbjct: 943 RYQSTLQFAAN 953
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 1335 bits (3455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/971 (70%), Positives = 757/971 (77%), Gaps = 66/971 (6%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRSYAFVFFKRVDDAKAAKNALQGFS 82
NNL+V NL+PDVTDSDLMDLF QYGALDSVT Y++R+YAFVFFKR+DDAKAAKNALQGF+
Sbjct: 27 NNLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSARNYAFVFFKRIDDAKAAKNALQGFN 86
Query: 83 LRGVSLKIEFAFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKFFRDRNTACVEF 142
RG SL+IEFA PAK CKQLWVGGISPAVT+EDLEA+F KFGK+EDFKFFRDRNTACVEF
Sbjct: 87 FRGNSLRIEFARPAKTCKQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNTACVEF 146
Query: 143 FNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQFQGKSMGPTDSYSGQKR 202
FNLDDA QA+KIMNG+ IGG+ IRVDFLRSN KRDQ DYGQFQGKS GP+DSYSG KR
Sbjct: 147 FNLDDAIQAMKIMNGKHIGGENIRVDFLRSNYAKRDQGLDYGQFQGKSFGPSDSYSGHKR 206
Query: 203 PLLSPPLMGRKGDHIPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIRSFPSKNHALVE 262
PL S PLM RKGD P+NILWIGYPP VQIDEQMLHNAMILFGEIERI+S PS+N + VE
Sbjct: 207 PLNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSVPSRNFSFVE 266
Query: 263 FRSVDEARRAKEGLQGRLFNDPRITITYSSSDPVPGKDYPTFYPGSNGPRPDMFLNEHPF 322
FRSVDEARRAKEGLQGRLFNDP ITI YS++D V GKDYP FYPGSNGPRPD+FLNEHP+
Sbjct: 267 FRSVDEARRAKEGLQGRLFNDPHITINYSNADQVQGKDYPGFYPGSNGPRPDLFLNEHPY 326
Query: 323 QPFQMDLIGHNRPMVPNSFPGQLPHSGIVGPNIPMRPFGAQGGLDSGVSGPEFNDISSLH 382
+P QMDL GHNRPM+PNSFPGQLP G VGPNIPMRPFG GG +S VSGPEFN+ S+LH
Sbjct: 327 RPAQMDLFGHNRPMIPNSFPGQLPSGGNVGPNIPMRPFGPNGGPESVVSGPEFNENSTLH 386
Query: 383 QFQDGSSMSKIGPNWKRPSPPAQGILPSPTPGVRLPTRSASGAWDVLDINHIPRDPKRSR 442
+ GPNWKRPSPPAQG+L SP PG RLP RS+SGAWDVLDINHIPRD KRSR
Sbjct: 387 K----------GPNWKRPSPPAQGLLSSPVPGARLPARSSSGAWDVLDINHIPRDSKRSR 436
Query: 443 IDGTPLRNIDDRGFALEQQYGNNPVIDGGGSDPYMNMQGKSHIGPVSTRITAGVHGSGQP 502
IDG L N DPY G+ +G STRIT GVH QP
Sbjct: 437 IDGA-LPN----------------------DDPYA---GRGILGSASTRITGGVHAV-QP 469
Query: 503 DIDHIWRGVLAKGGTPVCRARCVPVGKGIGAELPDVVDCSARTGLDILSKHYADAIGFEI 562
DHIWRG++AKGGTPVCRARC+PVGKGIG ELP+VVDCSARTGLD L+ HYADAI FEI
Sbjct: 470 --DHIWRGLIAKGGTPVCRARCIPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEI 527
Query: 563 VFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFADNNTLFLVPPSDFLTDILKVTGPERLY 622
VFFLPDSE DF SYTEFLRYL AKNRAGVAKF +N TLFLVPPSDFLTD+LKVTGPERLY
Sbjct: 528 VFFLPDSENDFGSYTEFLRYLGAKNRAGVAKF-ENTTLFLVPPSDFLTDVLKVTGPERLY 586
Query: 623 GVVLKFPSLPNSTPMQESSHLPIPSTQYMQQIPPSQAEYGMIPSKEERFLQADYNRSLHD 682
GVVLKF + + P+ +SSHLP+PS QYMQQ+PPSQAEY M P+KEE+ L +YNR LH+
Sbjct: 587 GVVLKFAPVQSGVPVHQSSHLPVPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHE 646
Query: 683 DSKLSAKPIA--TGGPPPVQSMPSEYAPNTTVSGSQAAVGLTPELIATLASFLPANAQSS 740
DSKL AK + TGGP VQ S+YA NT SGSQA V LTPELIATLASFLP N QS
Sbjct: 647 DSKLPAKQVYPPTGGPSSVQPAASDYALNTAASGSQAGVALTPELIATLASFLPTNVQSP 706
Query: 741 APDGANPAGGSLNVKPPFPPSAPNDGNQSHLWKQDHQIADQSIYPPPQFRSMYNFNNGHY 800
A DGA GS VKPPFPP APNDGNQS +WKQDHQIADQSI+P QFR+MYN +N H+
Sbjct: 707 AIDGAKSGAGSSTVKPPFPPVAPNDGNQSQIWKQDHQIADQSIHPSQQFRNMYNSHNAHH 766
Query: 801 QSYPPAPAPGHPAQLVSGSSHIQDSAVGMQQPGAVSSTYMSNFATPSHNGQSAVSSHVNQ 860
Q YPPA APGH AQ SGSSHIQD+AV QQ G VSS +SNF TP+ +GQ A S H +
Sbjct: 767 QPYPPASAPGHTAQAFSGSSHIQDNAVNQQQQGVVSSRLVSNFVTPTQSGQVAASPHFSH 826
Query: 861 QYQVDASPSTQRGFGVAQGTDASVLYNSQAFQQPNSNS--------------------QA 900
QYQ + P+TQ+GF G+D SVLYNSQAFQQPN+N Q
Sbjct: 827 QYQAEVPPNTQKGF---PGSDVSVLYNSQAFQQPNNNHHPFQQPNNNPQHFQQSNNNPQP 883
Query: 901 FQPPNNSMSYSNQVNSANPSQQPTGIPYAVGQINSDAPNQQLPVFGAGQGTSEVEADKNQ 960
FQ PNNS++ S+QVNSANP QP + Y Q+NS+ P QQ P FG GQG E+EADKNQ
Sbjct: 884 FQQPNNSIALSSQVNSANPQHQPV-MQYTADQVNSNPPIQQHPAFGVGQGPPELEADKNQ 942
Query: 961 RYQSTLQFAAN 971
RYQSTLQFAAN
Sbjct: 943 RYQSTLQFAAN 953
>Medtr3g079310.1 | RNA recognition motif (RRM) containing protein |
HC | chr3:35657324-35668580 | 20130731
Length = 928
Score = 156 bits (395), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 106/175 (60%), Gaps = 13/175 (7%)
Query: 472 GSDPYMNMQGKSHIGP--VSTRITAGVHGSGQPD----IDHIWRGVLAKGGTPVCRARCV 525
G PY N Q +GP + + + +PD + W G +AKGGTP+CRARC
Sbjct: 458 GRKPYDNFQ----MGPGALQSNFVEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCF 513
Query: 526 PVGKGIGAELPDVVDCSARTGLDILSKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKA 585
PVGK + LP+ +DC+ART LD+LSKHY A+G +VFF+P S+ D Y EF+ YL+
Sbjct: 514 PVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEE 573
Query: 586 KNRAGVAKFADNNTLFLVPPSDFLTDILKVTGPERLYGVVLK--FPSLPNSTPMQ 638
K RA V+K D TLFLVPPSDF +LKV G + GV+L+ +P L N PM
Sbjct: 574 KKRAAVSKVDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGL-NQGPMH 627
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 111/213 (52%), Gaps = 29/213 (13%)
Query: 98 PCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKFFRDRNTACVEFFNLDDATQAVKIMNG 157
P + LWVG +S + ++L F +FG LE F R+ A + F +DA A++ + G
Sbjct: 41 PSRHLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQG 100
Query: 158 QRIGGDQIRVDFLRSN---STKRDQLPDYG----------------QFQGKSMGPTDSYS 198
+ G+ +R++F +++ + RD+ DY +F+G+ P YS
Sbjct: 101 FLLAGNPLRIEFAKADKPSTVMRDE--DYSRDERRPALRGSPFSQREFRGRHGSPEPHYS 158
Query: 199 GQKRPLLSPPLMGRKGDHIPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIRSFPSKNH 258
+ + P PS +LW+G+P +++DE +L A FGEIE+I +FP +++
Sbjct: 159 DKFKLSDKNPE--------PSEVLWVGFPAQLKVDESILGRAFAPFGEIEKISTFPGRSY 210
Query: 259 ALVEFRSVDEARRAKEGLQGRLFNDPRITITYS 291
A V + SV A A + LQG+LF +PR+ I ++
Sbjct: 211 AFVRYSSVASACIALDALQGKLFGNPRVHICFA 243
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 57/201 (28%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRSYAFVFFKRVDDAKAAKNALQGFSL 83
+LWVGNL+ ++ + +L F ++G L+ V RSYAF+ F+ +DA A +LQGF L
Sbjct: 44 HLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFLL 103
Query: 84 RGVSLKIEFAFPAK---------------------------------------------- 97
G L+IEFA K
Sbjct: 104 AGNPLRIEFAKADKPSTVMRDEDYSRDERRPALRGSPFSQREFRGRHGSPEPHYSDKFKL 163
Query: 98 ------PCKQLWVGGISPAVTRED---LEAEFHKFGKLEDFKFFRDRNTACVEFFNLDDA 148
P + LWVG PA + D L F FG++E F R+ A V + ++ A
Sbjct: 164 SDKNPEPSEVLWVG--FPAQLKVDESILGRAFAPFGEIEKISTFPGRSYAFVRYSSVASA 221
Query: 149 TQAVKIMNGQRIGGDQIRVDF 169
A+ + G+ G ++ + F
Sbjct: 222 CIALDALQGKLFGNPRVHICF 242
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSV-TCYTSRSYAFVFFKRVDDAKAAKNALQGFSL 83
L+V N+ +V DS+L LF QYG + ++ T R + + + + A+ A ALQ L
Sbjct: 95 LFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 154
Query: 84 RGVSLKIEFAFPA-----KPCKQ--LWVGGISPAVTREDLEAEFHKFGKLEDFKFF-RDR 135
R L I F+ P K Q L V + P+V+ +DL F +G++++ + R
Sbjct: 155 RRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKR 214
Query: 136 NTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQ 185
+ +EF+++ A A+K +N I G +I+++ R +R+ + Q
Sbjct: 215 HHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQ 264
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSV-TCYTSRSYAFVFFKRVDDAKAAKNALQGFSL 83
L+V N+ +V DS+L LF QYG + ++ T R + + + + A+ A ALQ L
Sbjct: 211 LFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 270
Query: 84 RGVSLKIEFAFPA-----KPCKQ--LWVGGISPAVTREDLEAEFHKFGKLEDFKFF-RDR 135
R L I F+ P K Q L V + P+V+ +DL F +G++++ + R
Sbjct: 271 RRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKR 330
Query: 136 NTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQ 185
+ +EF+++ A A+K +N I G +I+++ R +R+ + Q
Sbjct: 331 HHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQ 380
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSV-TCYTSRSYAFVFFKRVDDAKAAKNALQGFSL 83
L+V N+ +V DS+L LF QYG + ++ T R + + + + A+ A ALQ L
Sbjct: 200 LFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 259
Query: 84 RGVSLKIEFAFPA-----KPCKQ--LWVGGISPAVTREDLEAEFHKFGKLEDFKFF-RDR 135
R L I F+ P K Q L V + P+V+ +DL F +G++++ + R
Sbjct: 260 RRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKR 319
Query: 136 NTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQ 185
+ +EF+++ A A+K +N I G +I+++ R +R+ + Q
Sbjct: 320 HHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQ 369
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSV-TCYTSRSYAFVFFKRVDDAKAAKNALQGFSL 83
L+V N+ +V DS+L LF QYG + ++ T R + + + + A+ A ALQ L
Sbjct: 197 LFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 256
Query: 84 RGVSLKIEFAFPA-----KPCKQ--LWVGGISPAVTREDLEAEFHKFGKLEDFKFF-RDR 135
R L I F+ P K Q L V + P+V+ +DL F +G++++ + R
Sbjct: 257 RRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKR 316
Query: 136 NTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQ 185
+ +EF+++ A A+K +N I G +I+++ R +R+ + Q
Sbjct: 317 HHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQ 366
>Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883965-21877390 | 20130731
Length = 865
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+V N+ +V D++L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 198 LFVRNINSNVEDTELRTLFEQYG--DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 255
Query: 82 SLRGVSLKIEFAFPA-----KPCKQ--LWVGGISPAVTREDLEAEFHKFGKLEDFKFF-R 133
LR L I F+ P K Q L V + P+V+ EDL F +G++++ +
Sbjct: 256 PLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 315
Query: 134 DRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQ 185
R+ +E++++ A A+K +N I G +I+++ R +R+ + Q
Sbjct: 316 KRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQ 367
>Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883858-21877390 | 20130731
Length = 865
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+V N+ +V D++L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 198 LFVRNINSNVEDTELRTLFEQYG--DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 255
Query: 82 SLRGVSLKIEFAFPA-----KPCKQ--LWVGGISPAVTREDLEAEFHKFGKLEDFKFF-R 133
LR L I F+ P K Q L V + P+V+ EDL F +G++++ +
Sbjct: 256 PLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 315
Query: 134 DRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQ 185
R+ +E++++ A A+K +N I G +I+++ R +R+ + Q
Sbjct: 316 KRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQ 367
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+V N+ +V DS+L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 200 LFVRNINSNVEDSELRTLFEQYG--DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 257
Query: 82 SLRGVSLKIEFAFPA-----KPCKQ--LWVGGISPAVTREDLEAEFHKFGKLEDFKFF-R 133
LR L I F+ P K Q L V + P+V+ +DL F +G++++ +
Sbjct: 258 PLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPH 317
Query: 134 DRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYGQ 185
R+ +EF+++ A A+K +N I G +I+++ R +R+ + Q
Sbjct: 318 KRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQ 369
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 28/182 (15%)
Query: 24 NLWVGNLAPDVTDSDLMDLFA-QYGALDSVTCY----TSRSYAFVFFKRVDDAKAAK--N 76
+++VG+LA DVTD+ L++ F+ +Y ++ + T RS + F + DD + +K N
Sbjct: 188 SIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALN 247
Query: 77 ALQGFSLRGVSLKIEFAFPAKPC---------------------KQLWVGGISPAVTRED 115
+ G +++I A P K ++VGG+ P+ T ED
Sbjct: 248 EMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAED 307
Query: 116 LEAEFHKFGKLEDFKFFRDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNST 175
L F ++G++ K + V+F N ++A +A++ +NG +G +R+ + R+ +
Sbjct: 308 LRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPAN 367
Query: 176 KR 177
K+
Sbjct: 368 KQ 369
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRSYAFVFFKRVDDAKAAKNALQ--GFS 82
++ GN D +S+L LF +YG +D V +AF++ + DA+AA AL F
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKVDRVDMKA--GFAFIYMEDERDAEAAIRALDRIEFG 61
Query: 83 LRGVSLKIEF-----------------AFPAKPCKQLWVGGISPAVTR-EDLEAEFHKFG 124
+G L++E+ + A+P K L+V TR DLE F +G
Sbjct: 62 RKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEPYG 121
Query: 125 KLEDFKFFRDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRD 178
K+ + +N A V++ + DDA +A++ N ++ I V+F + +R+
Sbjct: 122 KIVSVRIR--KNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDDRRN 173
>Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45043643-45036753 | 20130731
Length = 969
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 13/155 (8%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+VGN+ + DS+L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 272 LFVGNITSNAEDSELKALFEQYG--DIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNR 329
Query: 82 SLRGVSLKIEFAFP-AKPCKQ------LWVGGISPAVTREDLEAEFHKFGKLEDFKFFRD 134
+L L I ++ P P ++ L + G+ AV +++L+ F +G++++ + +
Sbjct: 330 TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIYEYPE 389
Query: 135 RN-TACVEFFNLDDATQAVKIMNGQRIGGDQIRVD 168
N +EF+++ A +++ +NG + G I+++
Sbjct: 390 MNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLE 424
>Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45036736 | 20130731
Length = 969
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 13/155 (8%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+VGN+ + DS+L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 272 LFVGNITSNAEDSELKALFEQYG--DIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNR 329
Query: 82 SLRGVSLKIEFAFP-AKPCKQ------LWVGGISPAVTREDLEAEFHKFGKLEDFKFFRD 134
+L L I ++ P P ++ L + G+ AV +++L+ F +G++++ + +
Sbjct: 330 TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIYEYPE 389
Query: 135 RN-TACVEFFNLDDATQAVKIMNGQRIGGDQIRVD 168
N +EF+++ A +++ +NG + G I+++
Sbjct: 390 MNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLE 424
>Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044605-45036753 | 20130731
Length = 923
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 13/155 (8%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+VGN+ + DS+L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 272 LFVGNITSNAEDSELKALFEQYG--DIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNR 329
Query: 82 SLRGVSLKIEFAFP-AKPCKQ------LWVGGISPAVTREDLEAEFHKFGKLEDFKFFRD 134
+L L I ++ P P ++ L + G+ AV +++L+ F +G++++ + +
Sbjct: 330 TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIYEYPE 389
Query: 135 RN-TACVEFFNLDDATQAVKIMNGQRIGGDQIRVD 168
N +EF+++ A +++ +NG + G I+++
Sbjct: 390 MNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLE 424
>Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044593-45036753 | 20130731
Length = 923
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 13/155 (8%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+VGN+ + DS+L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 272 LFVGNITSNAEDSELKALFEQYG--DIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNR 329
Query: 82 SLRGVSLKIEFAFP-AKPCKQ------LWVGGISPAVTREDLEAEFHKFGKLEDFKFFRD 134
+L L I ++ P P ++ L + G+ AV +++L+ F +G++++ + +
Sbjct: 330 TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIYEYPE 389
Query: 135 RN-TACVEFFNLDDATQAVKIMNGQRIGGDQIRVD 168
N +EF+++ A +++ +NG + G I+++
Sbjct: 390 MNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLE 424
>Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45037623 | 20130731
Length = 923
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 13/155 (8%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+VGN+ + DS+L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 272 LFVGNITSNAEDSELKALFEQYG--DIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNR 329
Query: 82 SLRGVSLKIEFAFP-AKPCKQ------LWVGGISPAVTREDLEAEFHKFGKLEDFKFFRD 134
+L L I ++ P P ++ L + G+ AV +++L+ F +G++++ + +
Sbjct: 330 TLSSRKLDIRYSIPKGNPTEKDIGHGTLMISGLDSAVLKDELKRIFGFYGEIKEIYEYPE 389
Query: 135 RN-TACVEFFNLDDATQAVKIMNGQRIGGDQIRVD 168
N +EF+++ A +++ +NG + G I+++
Sbjct: 390 MNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLE 424
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 30/212 (14%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQ-YGALDSVTCY------TSRSYAFVFFKRVDDAKAAKN 76
+++VG+LA DVTDS L + F+ Y ++ + S+ Y FV F + A
Sbjct: 191 SIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMT 250
Query: 77 ALQGFSLRGVSLKIEFAFPAKPCKQ---------------------LWVGGISPAVTRED 115
+ G ++I A P K ++VGG+ VT ED
Sbjct: 251 QMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDED 310
Query: 116 LEAEFHKFGKLEDFKFFRDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNST 175
L+ F ++G++ K + V+F N ++A +A++ +NG IG +R+ + R+ +
Sbjct: 311 LKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAY 370
Query: 176 KRDQLPDYGQFQGKSMGPTDSYSGQKRPLLSP 207
K+ +L D G + G P+ Y G + SP
Sbjct: 371 KQFRL-DVGSWAGPYF-PSPIYDGYGYAMPSP 400
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCY-----TSRSYAFVFFKRVDDAKAAKNA 77
NN++V NL+ TD +L F ++G + S S+ + FV F+ DDA A A
Sbjct: 213 NNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEA 272
Query: 78 LQGFSL---------------RGVSLKIEFAFPAKPC------KQLWVGGISPAVTREDL 116
L G + R LKI+F K L+V + ++ E L
Sbjct: 273 LNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKL 332
Query: 117 EAEFHKFGKLEDFKFFRD-----RNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLR 171
+ F +G + K RD R + V F ++A++A+ MNG+ + + V +
Sbjct: 333 KELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQ 392
Query: 172 SNSTKRDQL-PDYGQFQGKSMGPT 194
+R +L + Q + SM P+
Sbjct: 393 RKEDRRARLQAQFAQMRPVSMPPS 416
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 107/283 (37%), Gaps = 58/283 (20%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSV------TCYTSRSYAFVFFKRVDDAKAAKN 76
+L+VG+L +VTDS L DLF Q G + SV T S Y +V + DA A +
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 77 ALQGFSLRGVSLKIEFAFPAKPCKQ-----LWVGGISPAVTREDLEAEFHKFGKLEDFKF 131
L L ++I ++ ++ +++ + A+ + L F FG + K
Sbjct: 94 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKV 153
Query: 132 FRD-----RNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVD-FLRSNSTKRDQLPDYGQ 185
D + V+F + A +A++ +NG + Q+ V FLR +R+ D +
Sbjct: 154 AVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQ--ERESTGDRAK 211
Query: 186 FQGKSMGPTDSYSGQKRPLLSPPLMGRKGDHIPSNILWIGYPPAVQIDEQMLHNAMILFG 245
F +N+ + DE L FG
Sbjct: 212 F--------------------------------NNVFVKNLSESTTDDE--LKKTFGEFG 237
Query: 246 EIE-----RIRSFPSKNHALVEFRSVDEARRAKEGLQGRLFND 283
I R SK V F S D+A RA E L G+ +D
Sbjct: 238 TITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDD 280
>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 25/175 (14%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRSYAFVFFKRVDDAKAAKNALQ--GFS 82
++ GNL D SD+ LF +YG +D V + +AF++ + DA+ A L F
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKIDRVDLKS--GFAFIYMEDERDAEYAIRRLDQTEFG 61
Query: 83 LRGVSLKIEF-----------------AFPAKPCKQLWVGGISPAVTR-EDLEAEFHKFG 124
+G +++E+ + KP K L++ P TR DLE F +G
Sbjct: 62 RKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYG 121
Query: 125 KLEDFKFFRDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDF-LRSNSTKRD 178
K+ + + RN A ++F ++AT+A++ N + I V++ +R + KRD
Sbjct: 122 KISNLRI--RRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRD 174
>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 25/175 (14%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRSYAFVFFKRVDDAKAAKNALQ--GFS 82
++ GNL D SD+ LF +YG +D V + +AF++ + DA+ A L F
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKIDRVDLKS--GFAFIYMEDERDAEYAIRRLDQTEFG 61
Query: 83 LRGVSLKIEF-----------------AFPAKPCKQLWVGGISPAVTR-EDLEAEFHKFG 124
+G +++E+ + KP K L++ P TR DLE F +G
Sbjct: 62 RKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYG 121
Query: 125 KLEDFKFFRDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDF-LRSNSTKRD 178
K+ + + RN A ++F ++AT+A++ N + I V++ +R + KRD
Sbjct: 122 KISNLRI--RRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRD 174
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 120/297 (40%), Gaps = 33/297 (11%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSR----SYAFVFFKRVDDAKAAKNALQ 79
+++VGN+ +VTD L ++F G L C R SY FV + A A L
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPL--AGCKLIRKEKSSYGFVDYHDRASAALAIMTLH 118
Query: 80 GFSLRGVSLKIEFAFPAKPCK------QLWVGGISPAVTREDLEAEFHKFGKLEDFKFFR 133
G L G +LK+ +A+ + ++VG +SP VT L A F + D +
Sbjct: 119 GRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMW 178
Query: 134 DRNTA------CVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRS---NSTKRDQLPDYG 184
D T V F + DA A+ M G+ +G QIR ++ S+ +++ D
Sbjct: 179 DHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQ 238
Query: 185 QFQGKSMGPTDSYSGQKRPLLSPPLMGRKGDHIPS-NILWIGYPPAVQIDEQMLHNAMIL 243
+ G +D GQ P ++ PS +++G P + + LH
Sbjct: 239 NAVVLTNGSSD--GGQDNSNEDAP------ENNPSYTTVYVGNLPH-DVTQAELHCQFHA 289
Query: 244 FGE--IERIRSFPSKNHALVEFRSVDEARRAKEGLQGRLFNDPRITITYSSSDPVPG 298
G +E +R K V + + +EA A + GR + ++ S PG
Sbjct: 290 LGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPG 346
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 120/297 (40%), Gaps = 33/297 (11%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSR----SYAFVFFKRVDDAKAAKNALQ 79
+++VGN+ +VTD L ++F G L C R SY FV + A A L
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPL--AGCKLIRKEKSSYGFVDYHDRASAALAIMTLH 118
Query: 80 GFSLRGVSLKIEFAFPAKPCK------QLWVGGISPAVTREDLEAEFHKFGKLEDFKFFR 133
G L G +LK+ +A+ + ++VG +SP VT L A F + D +
Sbjct: 119 GRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMW 178
Query: 134 DRNTA------CVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRS---NSTKRDQLPDYG 184
D T V F + DA A+ M G+ +G QIR ++ S+ +++ D
Sbjct: 179 DHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQ 238
Query: 185 QFQGKSMGPTDSYSGQKRPLLSPPLMGRKGDHIPS-NILWIGYPPAVQIDEQMLHNAMIL 243
+ G +D GQ P ++ PS +++G P + + LH
Sbjct: 239 NAVVLTNGSSD--GGQDNSNEDAP------ENNPSYTTVYVGNLPH-DVTQAELHCQFHA 289
Query: 244 FGE--IERIRSFPSKNHALVEFRSVDEARRAKEGLQGRLFNDPRITITYSSSDPVPG 298
G +E +R K V + + +EA A + GR + ++ S PG
Sbjct: 290 LGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPG 346
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 120/297 (40%), Gaps = 33/297 (11%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSR----SYAFVFFKRVDDAKAAKNALQ 79
+++VGN+ +VTD L ++F G L C R SY FV + A A L
Sbjct: 45 SVYVGNIHVNVTDKLLAEVFQSAGPL--AGCKLIRKEKSSYGFVDYHDRASAALAIMTLH 102
Query: 80 GFSLRGVSLKIEFAFPAKPCK------QLWVGGISPAVTREDLEAEFHKFGKLEDFKFFR 133
G L G +LK+ +A+ + ++VG +SP VT L A F + D +
Sbjct: 103 GRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMW 162
Query: 134 DRNTA------CVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRS---NSTKRDQLPDYG 184
D T V F + DA A+ M G+ +G QIR ++ S+ +++ D
Sbjct: 163 DHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQ 222
Query: 185 QFQGKSMGPTDSYSGQKRPLLSPPLMGRKGDHIPS-NILWIGYPPAVQIDEQMLHNAMIL 243
+ G +D GQ P ++ PS +++G P + + LH
Sbjct: 223 NAVVLTNGSSD--GGQDNSNEDAP------ENNPSYTTVYVGNLPH-DVTQAELHCQFHA 273
Query: 244 FGE--IERIRSFPSKNHALVEFRSVDEARRAKEGLQGRLFNDPRITITYSSSDPVPG 298
G +E +R K V + + +EA A + GR + ++ S PG
Sbjct: 274 LGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPG 330
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSR--SYAFVFFKRVDDAKAAKNALQGF 81
+++VGN+ P V++ L +LF+ GAL+ SY FV + A A L G
Sbjct: 47 SVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGR 106
Query: 82 SLRGVSLKIEFAFPAKPCK------QLWVGGISPAVTREDLEAEFHKFGKLEDFKFFRDR 135
++ G S+K+ +A+ + ++VG +SP VT L A F + D + D+
Sbjct: 107 NIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQ 166
Query: 136 NT------ACVEFFNLDDATQAVKIMNGQRIGGDQIRVDF 169
T V F N +A A+ + G+ +G QIR ++
Sbjct: 167 KTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNW 206
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 32/190 (16%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCY-----TSRSYAFVFFKRVDDAKAAKNA 77
NN++V NL+ T+ DL + F YG + S S+ + FV F+ +DA A A
Sbjct: 211 NNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEA 270
Query: 78 LQGFSL---------------RGVSLKIEFAFPAKPCK-------QLWVGGISPAVTRED 115
L G + R LK F K L++ + ++T E
Sbjct: 271 LNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEK 330
Query: 116 LEAEFHKFGKLEDFKFFRD-----RNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFL 170
L+ F +FG + +K RD R + V F ++A++A+ MNG+ I + V
Sbjct: 331 LKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVA 390
Query: 171 RSNSTKRDQL 180
+ +R +L
Sbjct: 391 QRKEDRRARL 400
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 29/186 (15%)
Query: 23 NNLWVGNLAPDVTDSDLMDLF-AQY----GALDSVTCYTSRS--YAFVFFKRVDDAKAAK 75
+ ++VG+LA DVTD L + F A+Y GA + T RS Y FV F + A
Sbjct: 155 HTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAM 214
Query: 76 NALQGFSLRGVSLKIEFAFPAKPC----------------------KQLWVGGISPAVTR 113
+QG ++I A P ++VG + P VT
Sbjct: 215 TEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTD 274
Query: 114 EDLEAEFHKFGKLEDFKFFRDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSN 173
+ L F ++G+L K + V+F + A +A++++NG +GG +R+ + R+
Sbjct: 275 DHLRQVFTQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTP 334
Query: 174 STKRDQ 179
S K+ Q
Sbjct: 335 SNKQTQ 340
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 26 WVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSR------SYAFVFFKRVDDAKAAKNALQ 79
+VGNL P +++ L +LF Q G + +V R Y FV F+ +DA A L
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 80 GFSLRGVSLKIEFAFPAKPC----KQLWVGGISPAVTREDLEAEFHKFGKL-EDFKFFRD 134
L G +++ A K L++G + P V + L F FG + + K RD
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 147
Query: 135 ------RNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQ 179
R + + + + + A++ MNGQ + QI V + TK ++
Sbjct: 148 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 25 LWVGNLAPDVTDSDLMDLF-AQYGALDSVTCYTSRS------YAFVFFKRVDDAKAAKNA 77
++VG+LA DV+D L ++F +Y ++ R+ Y FV F + A
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 78 LQGF---------------SLRGVSLKIEFAFPAKPCKQ--------LWVGGISPAVTRE 114
+QG +L + K + P + ++VG + P VT E
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDE 288
Query: 115 DLEAEFHKFGKLEDFKFFRDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNS 174
L+ F ++G+L K + V+F + A +A++++NG +GG +R+ + RS +
Sbjct: 289 HLKQVFTQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPA 348
Query: 175 TKRDQLPDYGQFQGKS 190
K+ Q D Q+ G S
Sbjct: 349 NKQTQ-QDPNQWNGSS 363
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCY-----TSRSYAFVFF------------ 65
NN++V NL+ VTD DL + F +YG + S S+ + FV F
Sbjct: 203 NNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEA 262
Query: 66 ---KRVDDAK-AAKNALQGFSLRGVSLKIEFAFPAKPC------KQLWVGGISPAVTRED 115
K+ DD + AL+ + R + LK K L++ + +VT E
Sbjct: 263 LNGKKFDDKEWYVGKALKKYE-RELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEK 321
Query: 116 LEAEFHKFGKLEDFKFFRD-----RNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFL 170
L F +FG + K RD R + V F ++AT+A+ MNG+ + G + V
Sbjct: 322 LSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPA 381
Query: 171 RSNSTKRDQL-PDYGQFQGKSMGP 193
+ ++ +L + Q + +M P
Sbjct: 382 QKKEERKARLQAQFSQVRPVTMAP 405
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRS------YAFVFFKRVDDAKAAKN 76
L V + DV L + ++YG L+ RS + +V F VDDAK +
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 77 ALQGFSLRGVSLKI-----EFAFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKF 131
R + +K+ E PAK +++V I P+VT E + F K+G + D
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYM 123
Query: 132 FRDRNTAC---VEFFNLDDATQAVKIMN-GQRIGGDQIRVDFLRSNSTKRDQLPDYGQFQ 187
+D+ + + F +A +M+ +GG + VD R+ + D P Q
Sbjct: 124 PKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD--RATPKEDDVKPTGRMSQ 181
Query: 188 GKSMGPTDSY 197
G G ++Y
Sbjct: 182 GGGYGAYNAY 191
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRS------YAFVFFKRVDDAKAAKN 76
L V + DV L + ++YG L+ RS + +V F VDDAK +
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 77 ALQGFSLRGVSLKI-----EFAFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKF 131
R + +K+ E PAK +++V I P+VT E + F K+G + D
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYM 123
Query: 132 FRDRNTAC---VEFFNLDDATQAVKIMN-GQRIGGDQIRVDFLRSNSTKRDQLPDYGQFQ 187
+D+ + + F +A +M+ +GG + VD R+ + D P Q
Sbjct: 124 PKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD--RATPKEDDVKPTGRMSQ 181
Query: 188 GKSMGPTDSY 197
G G ++Y
Sbjct: 182 GGGYGAYNAY 191
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRS------YAFVFFKRVDDAKAAKN 76
L V + DV L + ++YG L+ RS + +V F VDDAK +
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 77 ALQGFSLRGVSLKI-----EFAFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKF 131
R + +K+ E PAK +++V I P+VT E + F K+G + D
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYM 123
Query: 132 FRDRNTAC---VEFFNLDDATQAVKIMN-GQRIGGDQIRVDFLRSNSTKRDQLPDYGQFQ 187
+D+ + + F +A +M+ +GG + VD R+ + D P Q
Sbjct: 124 PKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD--RATPKEDDVKPTGRMSQ 181
Query: 188 GKSMGPTDSY 197
G G ++Y
Sbjct: 182 GGGYGAYNAY 191
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 23 NNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRS------YAFVFFKRVDDAKAAKN 76
L V + DV L + ++YG L+ RS + +V F VDDAK +
Sbjct: 4 RKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLS 63
Query: 77 ALQGFSLRGVSLKI-----EFAFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKF 131
R + +K+ E PAK +++V I P+VT E + F K+G + D
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYM 123
Query: 132 FRDRNTAC---VEFFNLDDATQAVKIMN-GQRIGGDQIRVDFLRSNSTKRDQLPDYGQFQ 187
+D+ + + F +A +M+ +GG + VD R+ + D P Q
Sbjct: 124 PKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD--RATPKEDDVKPTGRMSQ 181
Query: 188 GKSMGPTDSY 197
G G ++Y
Sbjct: 182 GGGYGAYNAY 191
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSV-TCYTSRS-----YAFVFFKRVDDAKAAKNA 77
+L+VG+L PD++DS L D F+ + L SV C S S Y +V F DA A
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 78 LQGFSLRGVSLKIEFAF----PAKPC-KQLWVGGISPAVTREDLEAEFHKFGKLEDFKFF 132
+L G ++++ ++ K C ++V ++ ++ LE F KFG + K
Sbjct: 71 KNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVV 130
Query: 133 -----RDRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPD 182
+ + V+F + A A++ +NG +G QI V S + PD
Sbjct: 131 MSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPD 185
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS-----RSYAFVFFKRVDDAKAAKNAL 78
N++V NLA + +S L D+F ++G + S S + Y FV F+ + A AA L
Sbjct: 99 NVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERL 158
Query: 79 QGFSLRGVSLKI-EF--------AFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDF 129
G+ + + + +F + P L++ + ++ L +F FGK+
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISL 218
Query: 130 KFFRDRNTAC-----VEFFNLDDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYG 184
+D N V F N +DA +A++ MNG ++G + V + + +R+Q+ +
Sbjct: 219 AVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKA-EREQIL-HQ 276
Query: 185 QFQGKSMGPTDSYSG 199
QF+ K Y G
Sbjct: 277 QFEEKRKEQVLKYKG 291
>Medtr8g100160.1 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr8:40164328-40156696 | 20130731
Length = 964
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+V N+ V D +L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 271 LFVRNINSSVEDFELKTLFEQYG--DIRTMYTACKHRGFVMISYFDLRAAQRAMQALQSK 328
Query: 82 SLRGVSLKIEFAFPA--KPCKQ-----LWVGGISPAVTREDLEAEFHKFGKLED-FKFFR 133
LR L I ++ P P K L + G+ +V+ ++ + F +G+++D +++
Sbjct: 329 PLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVSNDEFKRIFGFYGEIKDIYEYPE 388
Query: 134 DRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVD 168
++ +EF+++ A A++ +N I G QI+++
Sbjct: 389 MKHLKFIEFYDVRAAEAALRALNRIEIAGKQIKLE 423
>Medtr8g100160.2 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr8:40164328-40156696 | 20130731
Length = 968
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 25 LWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTS---RSYAFVFFKRVDDAKAAKNALQGF 81
L+V N+ V D +L LF QYG D T YT+ R + + + + A+ A ALQ
Sbjct: 271 LFVRNINSSVEDFELKTLFEQYG--DIRTMYTACKHRGFVMISYFDLRAAQRAMQALQSK 328
Query: 82 SLRGVSLKIEFAFPA--KPCKQ-----LWVGGISPAVTREDLEAEFHKFGKLED-FKFFR 133
LR L I ++ P P K L + G+ +V+ ++ + F +G+++D +++
Sbjct: 329 PLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVSNDEFKRIFGFYGEIKDIYEYPE 388
Query: 134 DRNTACVEFFNLDDATQAVKIMNGQRIGGDQIRVD 168
++ +EF+++ A A++ +N I G QI+++
Sbjct: 389 MKHLKFIEFYDVRAAEAALRALNRIEIAGKQIKLE 423
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSR--SYAFVFFKRVDDAKAAKNALQGF 81
+++VGN+ VT+ L ++FA G ++ + SY F+ + A A L G
Sbjct: 63 SVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGR 122
Query: 82 SLRGVSLKIEFAFPAKPCK------QLWVGGISPAVTREDLEAEFHKFGKLEDFKFFRDR 135
L G +K+ +A+ + + ++VG +SP VT L A F + D + D+
Sbjct: 123 HLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQ 182
Query: 136 NT------ACVEFFNLDDATQAVKIMNGQRIGGDQIRVDF 169
T V F + DA A+ + G+ +G QIR ++
Sbjct: 183 KTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNW 222
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 113/282 (40%), Gaps = 49/282 (17%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCY-----TSRSYAFVFFKRVDDAKAAKNAL 78
N++V NLA + + L DLF +YG + S S+ + ++ F + A A +
Sbjct: 104 NVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 79 QGFSLRGVSL-------KIEFAFPAKPCK--QLWVGGISPAVTREDLEAEFHKFGKLEDF 129
G ++R + K E + P K L+V + P VT + L +F FGK+
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSL 223
Query: 130 KFFRDRN--TACVEFFNL---DDATQAVKIMNGQRIGGDQIRVDFLRSNSTKRDQLPDYG 184
+D N + F N DDA +A++ M+G + G + V + +R+Q+ +
Sbjct: 224 AIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQ-KKVEREQILHH- 281
Query: 185 QFQGKSMGPTDSYSGQKRPLLSPPLMGRKG-DHIPSNILWIGYPPAVQIDEQMLHNAM-- 241
L KG H+ SNI +V +E H +
Sbjct: 282 ------------------------LFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACG 317
Query: 242 -ILFGEIERIRSFPSKNHALVEFRSVDEARRAKEGLQGRLFN 282
+L ++ R SK V F +V EA ++ G +F+
Sbjct: 318 EVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFH 359
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 24 NLWVGNLAPDVTDSDLMDLFAQYGALDSVTCY------TSRSYAFVFFKRVDDAKAAKNA 77
L+VGN DV L LF Q G ++ SR + FV V++A++A
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 78 LQGFSLRGVSLKIEFAFPA--------------KPCKQLWVGGISPAVTREDLEAEFHKF 123
G+ G SL + A P +P +++V ++ V LE F +
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEH 229
Query: 124 GKLEDFKFFRDRNTACVE---FFNLDDATQ---AVKIMNGQRIGGDQIRV 167
GK+ + DR T F + D T+ A+ ++GQ + G IRV
Sbjct: 230 GKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279