Miyakogusa Predicted Gene

Lj3g3v3312780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3312780.1 Non Characterized Hit- tr|B9T798|B9T798_RICCO
Endonuclease III, putative OS=Ricinus communis
GN=RCOM,41.3,0.4,seg,NULL,CUFF.45546.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g067060.1 | EndoIII-related endonuclease | HC | chr4:25264...    60   4e-10

>Medtr4g067060.1 | EndoIII-related endonuclease | HC |
           chr4:25264796-25259617 | 20130731
          Length = 381

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 20/118 (16%)

Query: 1   MLVV--SAPPPLSGLRRIQALIMSETPRRSYKASLSNTNTPTSLVEGXXXXXXXXXXXQL 58
           MLVV  S+   +SG  RI+A IMS+T         S+++ PTS                +
Sbjct: 1   MLVVPSSSHCFVSGSWRIKATIMSDTTTTFASIKPSDSD-PTS---------GASASQPV 50

Query: 59  RVFVRKNKRPRKMT-------MELQQKEPPPPTQDHKKLGPPEIEDFAYSGAN-VAEC 108
            V+VR+NK+ + +T        +LQQ +  P TQ HKK G PEIEDFAY G+N + +C
Sbjct: 51  HVYVRRNKKAKGITTTTTTNMTKLQQNQHLPSTQTHKKFGLPEIEDFAYKGSNELTQC 108