Miyakogusa Predicted Gene

Lj3g3v3302770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3302770.1 Non Characterized Hit- tr|I1LJQ9|I1LJQ9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,93.09,0,DNA-glycosylase,DNA glycosylase; no description,DNA
glycosylase; no description,Helix-turn-helix, ba,CUFF.45545.1
         (236 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g067060.1 | EndoIII-related endonuclease | HC | chr4:25264...   421   e-118
Medtr2g098660.1 | EndoIII-related endonuclease | HC | chr2:42235...   343   1e-94
Medtr8g028105.1 | HhH-GPD base excision DNA repair family protei...    55   7e-08

>Medtr4g067060.1 | EndoIII-related endonuclease | HC |
           chr4:25264796-25259617 | 20130731
          Length = 381

 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/216 (90%), Positives = 206/216 (95%)

Query: 1   MRCSAEAPVDTMGCEKAGNTLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTA 60
           MRCS +APVDTMGCEKAG+TLPPKERRFAVLVSSLLSSQTKDH+NHGAIQRLLQNDLLT 
Sbjct: 147 MRCSGDAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHINHGAIQRLLQNDLLTP 206

Query: 61  DAINNADEETIKKLIYPVGFYTRKATNLKKIANICLMKYDGDIPNSLEQLLLLPGIGPKM 120
           DAINNADEETIKKLIYPVGFYTRKATNLKKIA+ICLMKY GDIP+ +EQLL LPGIGPKM
Sbjct: 207 DAINNADEETIKKLIYPVGFYTRKATNLKKIAHICLMKYGGDIPSKIEQLLQLPGIGPKM 266

Query: 121 AHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEQTREALQRWLPREEWD 180
           AHLVMNV WN+VQGICVDTHVHRICNRLGWVS+LGTKQKTLTPE+TR +LQ WLPREEWD
Sbjct: 267 AHLVMNVAWNDVQGICVDTHVHRICNRLGWVSKLGTKQKTLTPEETRVSLQLWLPREEWD 326

Query: 181 PINPLLVGFGQTICTPLRPRCGECGISELCPSAFKE 216
           PINPLLVGFGQTICTPLRPRCGEC IS LCPSAFKE
Sbjct: 327 PINPLLVGFGQTICTPLRPRCGECSISHLCPSAFKE 362


>Medtr2g098660.1 | EndoIII-related endonuclease | HC |
           chr2:42235488-42232156 | 20130731
          Length = 331

 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/209 (77%), Positives = 179/209 (85%)

Query: 9   VDTMGCEKAGNTLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTADAINNADE 68
           +DT G  +  +  PPK+RRFAVL SSLLSSQTK+HV  GA QRL QN LLTADA+N ADE
Sbjct: 104 IDTTGDREDADIHPPKDRRFAVLASSLLSSQTKEHVTRGATQRLRQNGLLTADALNKADE 163

Query: 69  ETIKKLIYPVGFYTRKATNLKKIANICLMKYDGDIPNSLEQLLLLPGIGPKMAHLVMNVG 128
           ETIKK IYPVGFY RKA NLKKIA+ICL KYDGDIPNS+E+LL LPG+GPK+AHLVM + 
Sbjct: 164 ETIKKQIYPVGFYIRKAGNLKKIADICLTKYDGDIPNSIEELLSLPGVGPKIAHLVMIIA 223

Query: 129 WNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEQTREALQRWLPREEWDPINPLLVG 188
           WNNVQGICVDTHVHRI NRLGWVSR GTKQ+T  PE+TR+AL+RWLPREEW  IN LLVG
Sbjct: 224 WNNVQGICVDTHVHRISNRLGWVSRPGTKQRTSIPEETRKALERWLPREEWVAINLLLVG 283

Query: 189 FGQTICTPLRPRCGECGISELCPSAFKET 217
           FG+TICTPLRPRCGECG+S  CPSAFKET
Sbjct: 284 FGRTICTPLRPRCGECGVSRFCPSAFKET 312


>Medtr8g028105.1 | HhH-GPD base excision DNA repair family protein |
           HC | chr8:10441758-10437108 | 20130731
          Length = 456

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 25  ERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTADAINNADEETIKKLIYPVGFYTRK 84
           +R + V VS ++  QT+         R +     T   +  A  E + ++   +G+Y R 
Sbjct: 79  KRAYGVWVSEVMLQQTRVQTVIAYFNRWMLK-WPTIHHLAKASLEEVNEIWAGLGYYRRA 137

Query: 85  ATNLKKIANICLMKYDGDIPNSLEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRI 144
              L+    I  +   G IP +   L  +PGIG   +  + ++ +     + VD +V R+
Sbjct: 138 RFLLEGAKQI--VAEGGSIPKTASTLRKIPGIGDYTSGAIASIAFKEAVPV-VDGNVIRV 194

Query: 145 CNRLGWVSRLGTKQKTLTPEQTREALQRWLPREEWDPINPLLVGFGQTICTPLRPRCGEC 204
             RL  +S    K   +       A Q   P    D  N  L+  G T+CTPL P C  C
Sbjct: 195 IARLRAISE-NPKDSVIIKRFWEIAAQLVDPLRPGD-FNQALMELGATVCTPLNPSCSSC 252

Query: 205 GISELC 210
             SE C
Sbjct: 253 PASEFC 258