Miyakogusa Predicted Gene

Lj3g3v3302760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3302760.1 Non Characterized Hit- tr|J3JYH3|J3JYH3_9CUCU
Uncharacterized protein OS=Dendroctonus ponderosae
PE=,28.94,4e-17,seg,NULL; GAMMA-SECRETASE SUBUNIT
APH-1,Gamma-secretase subunit Aph-1; Aph-1,Gamma-secretase
subunit,CUFF.45544.1
         (249 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g067050.1 | gamma-secretase subunit Aph-1, putative | HC |...   365   e-101
Medtr4g067050.2 | gamma-secretase subunit Aph-1, putative | HC |...   321   4e-88

>Medtr4g067050.1 | gamma-secretase subunit Aph-1, putative | HC |
           chr4:25258746-25255171 | 20130731
          Length = 249

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/249 (73%), Positives = 197/249 (79%)

Query: 1   MTVSAGIGYALVALGPSLSIFISVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRGFLPLS 60
           MTV+AGIGYAL+ALGPSLSIF+SVISKKPF                       R FLP +
Sbjct: 1   MTVAAGIGYALIALGPSLSIFVSVISKKPFLILTLLASTLLWLISLIALSGIWRAFLPFN 60

Query: 61  TTAWWPYAILILSSIAFQEGLRLFFWKIYKRLEDILDAFADRVSKPHLFLTDKMLIXXXX 120
            TA WPYAILILSS+AFQE LRLFFWKI+KRLED+LDAFADRVSKPHLFLTDKMLI    
Sbjct: 61  PTAVWPYAILILSSVAFQEALRLFFWKIFKRLEDMLDAFADRVSKPHLFLTDKMLIALAG 120

Query: 121 XXXXXXXXXXFFCISLLTPAFGPATYFVDRCSQVPFFLLSALIGLAFVTIHTFSMVIAFN 180
                     FFCISLLTPAFGPATYFVD+CS++PFFLLSA+I LAFVTIHTFSMVIAFN
Sbjct: 121 GLGHGVAHAVFFCISLLTPAFGPATYFVDKCSKIPFFLLSAVIALAFVTIHTFSMVIAFN 180

Query: 181 GYAEGNKVDQYFVPIVHFVAGAVTMVNLAPGGCTVGIPLLYFVTFLTLIHCGRMAWRRLT 240
           GYAEGNKVD+YFVPIVH +AG +TMVNLAPGGC VGIPLLYF   LTLIHCGRM WRRLT
Sbjct: 181 GYAEGNKVDRYFVPIVHVIAGMLTMVNLAPGGCAVGIPLLYFTAILTLIHCGRMVWRRLT 240

Query: 241 ENSIRLSNS 249
           EN IR S+S
Sbjct: 241 ENPIRPSHS 249


>Medtr4g067050.2 | gamma-secretase subunit Aph-1, putative | HC |
           chr4:25258781-25254661 | 20130731
          Length = 227

 Score =  321 bits (822), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 155/196 (79%), Positives = 167/196 (85%)

Query: 54  RGFLPLSTTAWWPYAILILSSIAFQEGLRLFFWKIYKRLEDILDAFADRVSKPHLFLTDK 113
           R FLP + TA WPYAILILSS+AFQE LRLFFWKI+KRLED+LDAFADRVSKPHLFLTDK
Sbjct: 32  RAFLPFNPTAVWPYAILILSSVAFQEALRLFFWKIFKRLEDMLDAFADRVSKPHLFLTDK 91

Query: 114 MLIXXXXXXXXXXXXXXFFCISLLTPAFGPATYFVDRCSQVPFFLLSALIGLAFVTIHTF 173
           MLI              FFCISLLTPAFGPATYFVD+CS++PFFLLSA+I LAFVTIHTF
Sbjct: 92  MLIALAGGLGHGVAHAVFFCISLLTPAFGPATYFVDKCSKIPFFLLSAVIALAFVTIHTF 151

Query: 174 SMVIAFNGYAEGNKVDQYFVPIVHFVAGAVTMVNLAPGGCTVGIPLLYFVTFLTLIHCGR 233
           SMVIAFNGYAEGNKVD+YFVPIVH +AG +TMVNLAPGGC VGIPLLYF   LTLIHCGR
Sbjct: 152 SMVIAFNGYAEGNKVDRYFVPIVHVIAGMLTMVNLAPGGCAVGIPLLYFTAILTLIHCGR 211

Query: 234 MAWRRLTENSIRLSNS 249
           M WRRLTEN IR S+S
Sbjct: 212 MVWRRLTENPIRPSHS 227