Miyakogusa Predicted Gene

Lj3g3v3237860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3237860.1 Non Characterized Hit- tr|I3SNZ2|I3SNZ2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.28,0,S4
RNA-binding domain,RNA-binding S4 domain; U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN PROTEIN IMP3,NULL;,CUFF.45490.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g102530.3 | U3 small nucleolar ribonucleoprotein IMP3 | HC...   255   1e-68
Medtr8g102530.1 | U3 small nucleolar ribonucleoprotein IMP3 | HC...   255   1e-68
Medtr8g102530.2 | U3 small nucleolar ribonucleoprotein IMP3 | HC...   230   4e-61
Medtr4g021290.1 | 40S ribosomal S9-like protein | HC | chr4:6900...    54   5e-08
Medtr3g005450.1 | 40S ribosomal S9-like protein | HC | chr3:2083...    54   5e-08
Medtr3g005430.1 | 40S ribosomal S9-like protein | HC | chr3:2007...    54   5e-08
Medtr7g067490.1 | 40S ribosomal S9-like protein | HC | chr7:2465...    54   5e-08
Medtr1g068965.1 | 40S ribosomal S9-like protein | HC | chr1:2951...    53   1e-07

>Medtr8g102530.3 | U3 small nucleolar ribonucleoprotein IMP3 | HC |
           chr8:43168335-43171146 | 20130731
          Length = 182

 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/138 (86%), Positives = 130/138 (94%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YSS+C MVQKLVN +KQMDPKDP RVDMTDKLLEKLYNMGVI TRQSIT CE LTVS+F
Sbjct: 45  KYSSICRMVQKLVNTVKQMDPKDPFRVDMTDKLLEKLYNMGVISTRQSITLCERLTVSAF 104

Query: 63  CRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 122
           CRRRLSTVLV+LKFAEHLKEAVTYIEQGHVRVGP T+TDPA+LVTRNMED +TWVDSSKI
Sbjct: 105 CRRRLSTVLVKLKFAEHLKEAVTYIEQGHVRVGPNTITDPAYLVTRNMEDLITWVDSSKI 164

Query: 123 KRKVLKYNDKLDDYDIMN 140
           KRKVL+YNDKLDDYD+MN
Sbjct: 165 KRKVLQYNDKLDDYDLMN 182


>Medtr8g102530.1 | U3 small nucleolar ribonucleoprotein IMP3 | HC |
           chr8:43168335-43171146 | 20130731
          Length = 182

 Score =  255 bits (651), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/138 (86%), Positives = 130/138 (94%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YSS+C MVQKLVN +KQMDPKDP RVDMTDKLLEKLYNMGVI TRQSIT CE LTVS+F
Sbjct: 45  KYSSICRMVQKLVNTVKQMDPKDPFRVDMTDKLLEKLYNMGVISTRQSITLCERLTVSAF 104

Query: 63  CRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 122
           CRRRLSTVLV+LKFAEHLKEAVTYIEQGHVRVGP T+TDPA+LVTRNMED +TWVDSSKI
Sbjct: 105 CRRRLSTVLVKLKFAEHLKEAVTYIEQGHVRVGPNTITDPAYLVTRNMEDLITWVDSSKI 164

Query: 123 KRKVLKYNDKLDDYDIMN 140
           KRKVL+YNDKLDDYD+MN
Sbjct: 165 KRKVLQYNDKLDDYDLMN 182


>Medtr8g102530.2 | U3 small nucleolar ribonucleoprotein IMP3 | HC |
           chr8:43168339-43171123 | 20130731
          Length = 173

 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/138 (81%), Positives = 122/138 (88%), Gaps = 9/138 (6%)

Query: 3   RYSSLCGMVQKLVNILKQMDPKDPVRVDMTDKLLEKLYNMGVIPTRQSITQCEHLTVSSF 62
           +YSS+C MVQKLVN +KQMDPKDP RVDMTDKLLEKL         QSIT CE LTVS+F
Sbjct: 45  KYSSICRMVQKLVNTVKQMDPKDPFRVDMTDKLLEKL---------QSITLCERLTVSAF 95

Query: 63  CRRRLSTVLVRLKFAEHLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKI 122
           CRRRLSTVLV+LKFAEHLKEAVTYIEQGHVRVGP T+TDPA+LVTRNMED +TWVDSSKI
Sbjct: 96  CRRRLSTVLVKLKFAEHLKEAVTYIEQGHVRVGPNTITDPAYLVTRNMEDLITWVDSSKI 155

Query: 123 KRKVLKYNDKLDDYDIMN 140
           KRKVL+YNDKLDDYD+MN
Sbjct: 156 KRKVLQYNDKLDDYDLMN 173


>Medtr4g021290.1 | 40S ribosomal S9-like protein | HC |
           chr4:6900307-6902241 | 20130731
          Length = 197

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 124 IHHARVLIRQRHIRVGRQVVNIPSFMV 150


>Medtr3g005450.1 | 40S ribosomal S9-like protein | HC |
           chr3:208355-206191 | 20130731
          Length = 197

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 124 IHHARVLIRQRHIRVGRQVVNIPSFMV 150


>Medtr3g005430.1 | 40S ribosomal S9-like protein | HC |
           chr3:200775-202751 | 20130731
          Length = 197

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 124 IHHARVLIRQRHIRVGRQVVNIPSFMV 150


>Medtr7g067490.1 | 40S ribosomal S9-like protein | HC |
           chr7:24652242-24653030 | 20130731
          Length = 197

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T++ +   A+ 
Sbjct: 64  LDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKS 123

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 124 IHHARVLIRQRHIRVGRQVVNIPSFMV 150


>Medtr1g068965.1 | 40S ribosomal S9-like protein | HC |
           chr1:29513381-29515006 | 20130731
          Length = 224

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 21  MDPKDPVRVDMTDKLLEKLYNMGVI-PTRQSITQCEHLTVSSFCRRRLSTVLVRLKFAEH 79
           +D K+P R+   + LL +++  G++  T+  +     LTV +F  RRL T+  +   A+ 
Sbjct: 91  LDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLAFKSGMAKS 150

Query: 80  LKEAVTYIEQGHVRVGPETVTDPAFLV 106
           +  A   I Q H+RVG + V  P+F+V
Sbjct: 151 IHHARVLIRQRHIRVGRQVVNIPSFMV 177