Miyakogusa Predicted Gene

Lj3g3v3236620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3236620.1 tr|B9HPB2|B9HPB2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_821523 PE=4
SV=1,30.08,4e-18,seg,NULL,CUFF.45474.1
         (356 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g064947.1 | hypothetical protein | HC | chr4:24275644-2427...   247   1e-65
Medtr2g097800.1 | hypothetical protein | HC | chr2:41783019-4178...   162   7e-40
Medtr5g081460.1 | hypothetical protein | HC | chr5:34885991-3488...    61   2e-09
Medtr0027s0090.1 | hypothetical protein | HC | scaffold0027:3158...    57   3e-08
Medtr1g072310.1 | hypothetical protein | HC | chr1:32094169-3209...    54   3e-07
Medtr3g069670.1 | hypothetical protein | HC | chr3:31181500-3118...    49   9e-06

>Medtr4g064947.1 | hypothetical protein | HC |
           chr4:24275644-24279651 | 20130731
          Length = 377

 Score =  247 bits (630), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 162/343 (47%), Positives = 193/343 (56%), Gaps = 41/343 (11%)

Query: 30  PPHSTNAQGRKDMDNDDDLLAELTHQ-MQMAQFMLQEDNKFDFPG-IGSENLEPWESIDW 87
           PPHS   Q  +    +DDL  ELT Q M M   ML   N  D P     E+L+P +S+  
Sbjct: 60  PPHSVEPQQLQG--KEDDLFDELTQQHMHMVNSML---NSSDIPSEYCGESLKPLDSMSC 114

Query: 88  SPQSTLWSPLCSKHGSSEGLSSKEPSPPTTPDNTRDWESVNDMVGMLEKMKLDERGSSKY 147
             Q++LWSPLCS  GSSEG  S  P  P+ P N+ D +   D++ ML+KMK DE  SS+Y
Sbjct: 115 WSQTSLWSPLCSNQGSSEG--SLSPKEPSEPGNSHDSDCF-DLLKMLDKMKFDESDSSRY 171

Query: 148 H--------SGYGVGVCS-DQSLFQEQIRATXXXXXXXXXXXXXXXXXT----DHSHKSQ 194
           H          + VGVCS +Q L   QIRA                        H H S 
Sbjct: 172 HPSSEMESSQSHAVGVCSSNQFLLNAQIRANQMSRQRIEQMLSLEQKLAAYRESHGHLSP 231

Query: 195 QFQXXXXXXXXXXXXXXXXXXXXXXXXXXXQTRPGSLHQQTGSEMQAIFPGSSGSRATSC 254
           Q Q                             RPG +HQQ GSE +  F G++GSR TSC
Sbjct: 232 QIQKNGKEDDVRFGMAPLQ-------------RPGPMHQQAGSEKRTDFQGATGSRGTSC 278

Query: 255 GTGVFLPRAGTNAPSSSESRNKRPGNKGCPTVLIPARVVQALQLHFDQIAATSGPTKPAG 314
           GTGVFLPR G +A  S ++  KRPG KGC TVLIP RVVQALQLHFDQIAATSGP KP  
Sbjct: 279 GTGVFLPRGGVSAFQSHQT--KRPG-KGCSTVLIPERVVQALQLHFDQIAATSGP-KPRV 334

Query: 315 FPALNDVLVN-NRNGLYSLQKRQSRRKPEHVQNDMILPREWTY 356
           FP L+DVLV+ NR+G+YSLQKRQSR+K   +QN+MILPREWTY
Sbjct: 335 FPPLHDVLVSTNRDGMYSLQKRQSRKKQTQIQNEMILPREWTY 377


>Medtr2g097800.1 | hypothetical protein | HC |
           chr2:41783019-41788049 | 20130731
          Length = 321

 Score =  162 bits (409), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 163/329 (49%), Gaps = 49/329 (14%)

Query: 45  DDDLLAELTHQMQMAQFMLQE---DNKFDFPGIGSE--NLE-PWESIDWSPQSTLWSPLC 98
           D+D + ELTHQM  +QFMLQE   D+ FDF  I S+  N E  W+ I  SP STLWSP+ 
Sbjct: 25  DEDFITELTHQM--SQFMLQEEDIDDSFDFSSIASQSHNSELSWDLIS-SPDSTLWSPMS 81

Query: 99  SKHGSSEGLSSKEPSPPTTPD-NTRDWESVNDMVGMLEKMKLDERGSSK----------Y 147
              GSSEG SS + SPP TP   T+ + +V   +     MK  E G+SK          +
Sbjct: 82  CNQGSSEG-SSLDSSPPATPCWKTKTYANVVKGI-QNNTMKRKETGTSKQNIHGSDIQSF 139

Query: 148 HSGYGVGVCSDQSLFQEQIRATXXXXXXXXXXXXXXXXXTDHSHKSQQFQXXXXXXXXXX 207
            S       S ++L +EQI+A                      H     +          
Sbjct: 140 KSCNVDRFSSHKALIEEQIKAIELRK----------------KHYISDIKQHALSPKQNE 183

Query: 208 XXXXXXXXXXXXXXXXXQTRPGSLHQQTGSEMQAIFPGSSGSRATSCGTGVFLPRAGTNA 267
                              R  S+    G  MQA+F G SGSR    GTGVFLPRAGT  
Sbjct: 184 AKEKEIQKQGNGGNCTRLPRLASVQTGGGGMMQAVFLGGSGSRN---GTGVFLPRAGTVV 240

Query: 268 PSSSESRNKRPGNKGCPTVLIPARVVQALQLHFDQIAATSGPTKPAGFPALNDVLVNNRN 327
             S  ++ K    KGC TVLIPARVVQALQLHFD+ A      K  G P L D+++N+R 
Sbjct: 241 APSESTKKK---GKGCSTVLIPARVVQALQLHFDKTAP-----KVVGVPPLRDLVLNHRE 292

Query: 328 GLYSLQKRQSRRKPEHVQNDMILPREWTY 356
           G++SL+  QS +    VQNDMILP+EWTY
Sbjct: 293 GMFSLENHQSTKAATEVQNDMILPQEWTY 321


>Medtr5g081460.1 | hypothetical protein | HC |
           chr5:34885991-34888604 | 20130731
          Length = 362

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 236 GSEMQAIFPGSSGSRATSCGTGVFLPR-AGTNAPSSSESRNKRPGNKGCPTVLIPARVVQ 294
           GS ++      SG +    GTGVFLPR  GT  P   ESR K      C  VL+PA+V+ 
Sbjct: 249 GSGLRTGLQRGSGVKRGCGGTGVFLPRPYGTPLP---ESRKK----TSCAPVLVPAKVIH 301

Query: 295 ALQLHFDQIAATSGPTKPAGFPALNDVLVNNRNGLYSLQKRQSRRKPEHVQNDMILPREW 354
           AL L+ +       P     F    D L+  RN L  +Q+R   ++ E    +  LP+EW
Sbjct: 302 ALNLNINDFNGGRQPRFSNDFGVDYDALLARRNALL-MQQRLRMQREEAASYESRLPQEW 360

Query: 355 TY 356
           TY
Sbjct: 361 TY 362


>Medtr0027s0090.1 | hypothetical protein | HC |
           scaffold0027:31589-34299 | 20130731
          Length = 390

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 59/127 (46%), Gaps = 19/127 (14%)

Query: 239 MQAIFPGSSGSRATSCGTGVFLPRAGTNAPSSSESRNKRPGNKGCPTVLIPARVVQALQL 298
           M A+F G+     +S GTGVFLPR         ESRN  P    C T  +PARV  AL L
Sbjct: 274 MGAVFHGNG--YGSSTGTGVFLPRP-------VESRNS-PKKPACTTAYVPARVAHALNL 323

Query: 299 HFDQIAATSGPTKPAGFPALNDVLV-----NNRNGLYSLQKRQ----SRRKPEHVQNDMI 349
             +       P +      + +V       +  N + S +KR     SR +P  V N++ 
Sbjct: 324 KLEDYIVGCQPHRFNSTSNVENVAAVAPPRHRGNNVNSQKKRSNNTTSRPQPAAVSNEIK 383

Query: 350 LPREWTY 356
           LP+EWTY
Sbjct: 384 LPQEWTY 390


>Medtr1g072310.1 | hypothetical protein | HC |
           chr1:32094169-32095458 | 20130731
          Length = 192

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 64/140 (45%), Gaps = 22/140 (15%)

Query: 229 GSLHQQ-------TGSEMQAIFPGSSGSRATSCGTGVFLPRAGTNAPSSSESRNKRPGNK 281
           GSL+Q+        G+ M+AIF  SS     SCGTGVFLP+    A +  + R K+P   
Sbjct: 63  GSLYQKPKLTNRGIGNGMRAIFLESSHG---SCGTGVFLPQ---RADTKFQPR-KKPA-- 113

Query: 282 GCPTVLIPARVVQALQLHFDQIAATSGP-----TKPAGFPALNDVLVNNRNGLYSLQKRQ 336
            C  VL+PARVVQAL ++   +     P      KP             +N      K+ 
Sbjct: 114 -CAPVLLPARVVQALNINVHALGVQISPQQVQKYKPRRGEGHTSKSTEKKNDQKDGSKQC 172

Query: 337 SRRKPEHVQNDMILPREWTY 356
           S    +     + LP+EWTY
Sbjct: 173 SFISQKQCSQRIFLPKEWTY 192


>Medtr3g069670.1 | hypothetical protein | HC |
           chr3:31181500-31183569 | 20130731
          Length = 343

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 19/130 (14%)

Query: 236 GSEMQAIFPGSSGSRATSCGTGVFLPR---AGTNAPSSSESRNKRPGNKGCPTVLIPARV 292
           GS  +    G S  +  S GTGVFLPR     T  P+ S+SR +     GC  V++PA+ 
Sbjct: 224 GSGFRVPVQGGSSLKKVSGGTGVFLPRHHYDTTPTPTPSDSRKR----TGCVPVMLPAKS 279

Query: 293 VQALQLHFDQIAATSGPTKPAGFPALNDVLVNNRNGLYSLQKRQSR------RKPEHVQN 346
           V +  ++ D    T+ P         N+   N+ + L + +    +      R+ E    
Sbjct: 280 VNSFNMNIDDPNVTNQPR------FTNNAFANDYDLLLARRNALLKQQLLMARREEAASC 333

Query: 347 DMILPREWTY 356
           ++ LP+EWTY
Sbjct: 334 EIRLPQEWTY 343