Miyakogusa Predicted Gene

Lj3g3v3236570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3236570.1 Non Characterized Hit- tr|G1M2H4|G1M2H4_AILME
Uncharacterized protein (Fragment) OS=Ailuropoda
melan,51.65,7e-19,Skp1_POZ,SKP1 component, POZ; POZ domain,BTB/POZ
fold; Found in Skp1 protein family,SKP1 component; ,CUFF.45472.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g064903.1 | transcription elongation factor B | HC | chr4:...   186   5e-48
Medtr4g064903.2 | transcription elongation factor B | HC | chr4:...   186   5e-48

>Medtr4g064903.1 | transcription elongation factor B | HC |
          chr4:24255096-24256023 | 20130731
          Length = 98

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/98 (87%), Positives = 94/98 (95%)

Query: 1  MKKEDTVKLISAEGFEFIVDKEAAMVSQTIHNMLTSPGSFSERERGQVTFPEISTAILEK 60
          MKKEDTVKLIS++GFEF+VDKEAAMVSQTI NMLTSPGSF+ERE GQVTFPEIS+ ILEK
Sbjct: 1  MKKEDTVKLISSDGFEFVVDKEAAMVSQTIRNMLTSPGSFAEREHGQVTFPEISSTILEK 60

Query: 61 ICQYFYWHLQFANGKETEFPIEPELTLELMMAANYLHT 98
          ICQYFYWHL+FA+GK+ EFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLEFASGKDREFPIEPELTLELMMAANYLHT 98


>Medtr4g064903.2 | transcription elongation factor B | HC |
          chr4:24255096-24256023 | 20130731
          Length = 98

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 86/98 (87%), Positives = 94/98 (95%)

Query: 1  MKKEDTVKLISAEGFEFIVDKEAAMVSQTIHNMLTSPGSFSERERGQVTFPEISTAILEK 60
          MKKEDTVKLIS++GFEF+VDKEAAMVSQTI NMLTSPGSF+ERE GQVTFPEIS+ ILEK
Sbjct: 1  MKKEDTVKLISSDGFEFVVDKEAAMVSQTIRNMLTSPGSFAEREHGQVTFPEISSTILEK 60

Query: 61 ICQYFYWHLQFANGKETEFPIEPELTLELMMAANYLHT 98
          ICQYFYWHL+FA+GK+ EFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLEFASGKDREFPIEPELTLELMMAANYLHT 98