Miyakogusa Predicted Gene

Lj3g3v3235430.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3235430.1 tr|B9HRS5|B9HRS5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_557298 PE=4
SV=1,30.38,2e-18,NAD_binding_10,NULL; seg,NULL; OS05G0291700
PROTEIN,NULL; NITROGEN METABOLIC REGULATION PROTEIN NMR-,CUFF.45503.1
         (520 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g064750.1 | plastid transcriptionally active protein | HC ...   593   e-170
Medtr4g025720.1 | hypothetical protein | LC | chr4:8759023-87565...    92   1e-18
Medtr4g068970.1 | NAD-dependent epimerase/dehydratase family pro...    82   1e-15

>Medtr4g064750.1 | plastid transcriptionally active protein | HC |
           chr4:24211056-24213980 | 20130731
          Length = 553

 Score =  593 bits (1530), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 337/532 (63%), Positives = 376/532 (70%), Gaps = 44/532 (8%)

Query: 30  IFAKKSG--SFPSFGLGGTKPRDDXXXXXXXXXXXXXXXPFRLNFGKIPDVTSLIPVVNN 87
           ++AKKSG  SFPSFGLG  KP+D+               PFR +FGK+PDVTSLIPV + 
Sbjct: 25  VYAKKSGGGSFPSFGLG--KPKDEEKDQQNGSSNSINN-PFRFDFGKLPDVTSLIPVGSK 81

Query: 88  NS--PGFSLGN-ARRKDPSTVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGSAQELAR 144
           N   PG S G+  R+KDPSTVFVAGATGQAG+RIAQTLLREGFSVRAGVPELGSAQELAR
Sbjct: 82  NGSLPGLSFGSPTRKKDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELGSAQELAR 141

Query: 145 LAAEYKIISKEEAKRLNAVQSSFDDTESIAKAIGNASKVVVTIGATENGPTAEVSISDXX 204
           LA++YKIIS EEAKRLNAVQSSFDD +SIAKAIGNASKVVVTIG TENGP  EVS SD  
Sbjct: 142 LASQYKIISNEEAKRLNAVQSSFDDADSIAKAIGNASKVVVTIGLTENGPATEVSTSDAL 201

Query: 205 XXXXXXXXXXXXXXXXIYDDSSA-GTSTYNVLDGITSFFNNIFSRSQPLTVQEFLQKVIE 263
                           IYD+++   TSTYNVLDGI+SFFNNIFS+SQPL++QEFLQKV+E
Sbjct: 202 QVIQAAQLAGVGHVAVIYDENNGVSTSTYNVLDGISSFFNNIFSKSQPLSIQEFLQKVVE 261

Query: 264 TDVKYTFIKTRLTDDYTPESSYNVVVVGEESTSANDYKVAKSKIASLVADVFSNTEVAEN 323
           TDVKYT IKT LTDD+ PESSYNVVV+GEE+T +NDYKV KS+IASLVADVFSNT+VAEN
Sbjct: 262 TDVKYTLIKTCLTDDFAPESSYNVVVLGEENTGSNDYKVTKSRIASLVADVFSNTQVAEN 321

Query: 324 KVVQVYSDPEAPLKRVDELFSTIPVDGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 383
           KVVQVYSDP APL+ VDELFSTIP DGRR                               
Sbjct: 322 KVVQVYSDPNAPLRPVDELFSTIPEDGRRKAYAEILEKAKAEEEARVEAEKAREAAATTK 381

Query: 384 XXXXXXXXXSQQETQASSLAKEAQEKAVAAGTSVEDLLSK-------------------- 423
                    S+QE QAS+L KE QEKA AAGTSVED+L+K                    
Sbjct: 382 KLEEEALKLSKQEAQASNLVKEDQEKAEAAGTSVEDILNKAKAFRAGFSRQKLSSQVATT 441

Query: 424 --------------AKDFGAGISWQKISSQIATSVQKPDEDEKPKVQVATVRGQAKARSL 469
                         AK FGAG SW+K SSQ+AT++QKPDEDE PKVQVATVRGQAKARSL
Sbjct: 442 NQNPDEDEKPKLQQAKGFGAGFSWKKFSSQVATAIQKPDEDESPKVQVATVRGQAKARSL 501

Query: 470 TPNKAVVKQ-TSPRSVATKPKEENRKQAETAKEVRKVFGGLFKQETIYIDDD 520
            PNKAV KQ T+PR+  +KPKEE RK  E  KEVRKVFGGLFKQETIYIDDD
Sbjct: 502 IPNKAVTKQTTTPRNSVSKPKEEKRKIEEKPKEVRKVFGGLFKQETIYIDDD 553


>Medtr4g025720.1 | hypothetical protein | LC | chr4:8759023-8756551
           | 20130731
          Length = 214

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 65/127 (51%), Gaps = 9/127 (7%)

Query: 343 FSTIPVDGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQQETQASSL 402
            STIP DGRR                                        S+QE QAS+L
Sbjct: 18  ISTIPEDGRRKAYAEILEKAKAKEEERVEAEKEREAAATTKKMEEEALKLSKQEAQASNL 77

Query: 403 AKEAQEKAVAAGTSVEDLLSKAKDF---------GAGISWQKISSQIATSVQKPDEDEKP 453
           AKE QEKA A  TSVED+L+KAK F           G SWQK +S++AT++QKPDEDE P
Sbjct: 78  AKEDQEKAEATDTSVEDILNKAKAFVQGFKAKVKPTGCSWQKFNSKVATAIQKPDEDENP 137

Query: 454 KVQVATV 460
           KVQVATV
Sbjct: 138 KVQVATV 144


>Medtr4g068970.1 | NAD-dependent epimerase/dehydratase family
           protein | HC | chr4:25897576-25892682 | 20130731
          Length = 641

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 27/262 (10%)

Query: 100 KDPSTVFVAGATGQAGVRIAQTLLREGFSVRAGVPELGSAQELARLAAEYKII----SKE 155
           KD + VFVAGATG+ G R  + L++ GF VRAGV     A  L +   + K+       E
Sbjct: 79  KDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGVRSAQRAGSLVQSVKQLKLDGTSGGSE 138

Query: 156 EAKRLNAVQSSFDDTESIAKAIGNASKVVVTIGATE------NGPTAEVSISDXXXXXXX 209
             ++L  V+   +  E I  A+GNAS V+ TIGA+E       GP       D       
Sbjct: 139 AVEKLEIVECDLEKPEQIKSALGNASTVICTIGASEKEIFDITGPYR----IDYMATKNL 194

Query: 210 XXXXXXXXXXXIYDDSSAGTSTYNVLDGITSFFNNIFSRSQPLTVQEFLQKVIETDVKYT 269
                          +S GT+ +     I + F  +    +    +E L   + + + YT
Sbjct: 195 VDAASVAKVNHFILVTSLGTNKFGFPAAILNLFWGVLCWKR--KAEEAL---LASGLPYT 249

Query: 270 FIKT----RLTDDYTPESSYNVVVVGEESTSANDYKVAKSKIASLVADVFSNTEVAENKV 325
            ++     R TD Y  + ++NV +  E++      +V+  ++A L+A +  N E++  K+
Sbjct: 250 IVRPGGMERPTDAY--KETHNVTLSTEDTLFGG--QVSNLQVAELMAAMAKNPELSYCKI 305

Query: 326 VQVYSDPEAPLKRVDELFSTIP 347
           V+V ++  APL   ++L + IP
Sbjct: 306 VEVIAETTAPLTPAEKLLAKIP 327