Miyakogusa Predicted Gene

Lj3g3v3235420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3235420.1 tr|Q3LRE2|Q3LRE2_SOYBN SP-2 OS=Glycine max PE=4
SV=1,81.4,0.00000000001,Transcription factor IIA (TFIIA), beta-barrel
domain,Transcription factor IIA, beta-barrel; Transcri,CUFF.45465.1
         (387 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g097740.1 | transcription factor IIA, alpha/beta subunit |...   479   e-135
Medtr2g097740.2 | transcription factor IIA, alpha/beta subunit |...   375   e-104

>Medtr2g097740.1 | transcription factor IIA, alpha/beta subunit | HC
           | chr2:41766158-41760609 | 20130731
          Length = 388

 Score =  479 bits (1233), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/393 (65%), Positives = 285/393 (72%), Gaps = 11/393 (2%)

Query: 1   MAASTTSQVYVQVIDDVVNKVRDEFVNN-AGPGDEVLKELQSIWESKMIQAGVFLGPIER 59
           MAASTTSQVY+ VI+DV+ KVRDEFVN  A PGDEVL+ELQ+IWESK IQAG  LGPIER
Sbjct: 1   MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60

Query: 60  -SGTVKPVQGGPITPVHDLNV--XXXXXXXXXXAEMLFXXXXXXXXXXXXXXGTVDSSMY 116
            +G  +P+ GGPITPVHDLNV            AE+LF              G  ++  Y
Sbjct: 61  NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGPGETPNY 120

Query: 117 NIPTGPSDYPSSGNDSGANVEIKGGRPGLYMQPPSPWMN--PRPSLDVNVAYVEGRDEAD 174
           NIPTGPSDY SSGND+G N ++KGGR   +M PPSPWMN   RP LDVNVAYVEGRDEAD
Sbjct: 121 NIPTGPSDY-SSGNDAGGNADVKGGRQA-FMPPPSPWMNMNQRPPLDVNVAYVEGRDEAD 178

Query: 175 RGNPNQPLTQDFFTMSSGKRKRDEVASQYNAGGYIPQQDGAGDARSRNFEIELYGGGISI 234
           RG  NQP+TQDFFTM+ GKRKR+++   Y+AGGYIPQQDGAGDA S +FEIE+ GG IS 
Sbjct: 179 RGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGYIPQQDGAGDAVSGDFEIEVCGGSISF 238

Query: 235 GAGHPTSKEKMPAHLERPASRIPQHDGPIPYDDDVLSTPNIYNYGGTFTEDYNIANTPAP 294
            + H  SK KMPA LER ASRIPQ DGPIPY+DDVLSTPNIYNYGG F EDYNIANTPAP
Sbjct: 239 NSQHTNSKGKMPADLERLASRIPQLDGPIPYEDDVLSTPNIYNYGGVFNEDYNIANTPAP 298

Query: 295 PEVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVT 354
           PEVPASTPALVAQNE                               +T HLVLAQFDKVT
Sbjct: 299 PEVPASTPALVAQNEA---VNEDEDDEPLNEDDDDDLDDLDQEDDQDTNHLVLAQFDKVT 355

Query: 355 RTKSRWKCTLKDGIMHINNKDILFNKANGEFDF 387
           RTKSRWKCTLKDGIMHIN KDILFNKA GEFDF
Sbjct: 356 RTKSRWKCTLKDGIMHINKKDILFNKATGEFDF 388


>Medtr2g097740.2 | transcription factor IIA, alpha/beta subunit | HC
           | chr2:41766143-41760609 | 20130731
          Length = 304

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/301 (67%), Positives = 227/301 (75%), Gaps = 8/301 (2%)

Query: 1   MAASTTSQVYVQVIDDVVNKVRDEFVNN-AGPGDEVLKELQSIWESKMIQAGVFLGPIER 59
           MAASTTSQVY+ VI+DV+ KVRDEFVN  A PGDEVL+ELQ+IWESK IQAG  LGPIER
Sbjct: 1   MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60

Query: 60  -SGTVKPVQGGPITPVHDLNV--XXXXXXXXXXAEMLFXXXXXXXXXXXXXXGTVDSSMY 116
            +G  +P+ GGPITPVHDLNV            AE+LF              G  ++  Y
Sbjct: 61  NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGPGETPNY 120

Query: 117 NIPTGPSDYPSSGNDSGANVEIKGGRPGLYMQPPSPWMN--PRPSLDVNVAYVEGRDEAD 174
           NIPTGPSDY SSGND+G N ++KGGR   +M PPSPWMN   RP LDVNVAYVEGRDEAD
Sbjct: 121 NIPTGPSDY-SSGNDAGGNADVKGGR-QAFMPPPSPWMNMNQRPPLDVNVAYVEGRDEAD 178

Query: 175 RGNPNQPLTQDFFTMSSGKRKRDEVASQYNAGGYIPQQDGAGDARSRNFEIELYGGGISI 234
           RG  NQP+TQDFFTM+ GKRKR+++   Y+AGGYIPQQDGAGDA S +FEIE+ GG IS 
Sbjct: 179 RGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGYIPQQDGAGDAVSGDFEIEVCGGSISF 238

Query: 235 GAGHPTSKEKMPAHLERPASRIPQHDGPIPYDDDVLSTPNIYNYGGTFTEDYNIANTPAP 294
            + H  SK KMPA LER ASRIPQ DGPIPY+DDVLSTPNIYNYGG F EDYNIANTPAP
Sbjct: 239 NSQHTNSKGKMPADLERLASRIPQLDGPIPYEDDVLSTPNIYNYGGVFNEDYNIANTPAP 298

Query: 295 P 295
           P
Sbjct: 299 P 299