Miyakogusa Predicted Gene

Lj3g3v3188600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3188600.1 Non Characterized Hit- tr|C5Y8K0|C5Y8K0_SORBI
Putative uncharacterized protein Sb05g027610
OS=Sorghu,49.08,1e-18,seg,NULL,CUFF.45405.1
         (297 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g096720.1 | transmembrane protein, putative | HC | chr2:41...   215   3e-56
Medtr7g024480.1 | transmembrane protein, putative | HC | chr7:80...   133   3e-31
Medtr7g024480.2 | transmembrane protein, putative | HC | chr7:80...   112   3e-25

>Medtr2g096720.1 | transmembrane protein, putative | HC |
           chr2:41307570-41309267 | 20130731
          Length = 272

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 145/314 (46%), Positives = 172/314 (54%), Gaps = 59/314 (18%)

Query: 1   MSLSGLVIALSVAFGCFXXXXXXXXXXXXWWKKRRXXXXXXXXDHSNDAKGLLNGVCWK- 59
           M    L I LS+ FG              WWKKRR        + SN AKG+    CWK 
Sbjct: 1   MYSRSLCITLSLVFGFIVLMAFAHIFYFLWWKKRRTHIDIEM-EQSNYAKGVFYWGCWKK 59

Query: 60  ------APSTTNSVTVRSSEPENKSHEPDLELG---KDVVGLKNFGEEGVECELMRLHNL 110
                 A +T+ SV +R  E  N+ H  DLELG   KD++ LK+ GEE +E ELMRLHNL
Sbjct: 60  TPCSLHATNTSESV-IREKEGTNQEH--DLELGVDGKDLL-LKSNGEESLEVELMRLHNL 115

Query: 111 AGPPRFLFTIXXXXXXXXXXXXGRSR-----KGSRTRSLSDIMVATIDSPFLNPVASSPL 165
            GPPRFLFTI            GRSR     KGSRT+SLSD +              SP+
Sbjct: 116 PGPPRFLFTITEETKEDLESEDGRSRCGRSRKGSRTKSLSDFI-------------DSPM 162

Query: 166 KCSLDGLDSFKHQGFNPLFESSMESELNRFRSNSPPPKFKFLRDAEEKLYRRLIEEAQRK 225
           KCSLD L+S+KHQGFNPLFE S ESE NRFRS SPPPKFKFLRDAEEKLYRRL+EE++RK
Sbjct: 163 KCSLDPLESYKHQGFNPLFEVSAESEFNRFRS-SPPPKFKFLRDAEEKLYRRLMEESKRK 221

Query: 226 A--KANGSVAESEAKGLPNSISVTDNSNRSLLRFVNNKEREQVKXXXXXXXXXXXXXXXX 283
           A  + +GSV+E E K   N    T  S+  +L   ++                       
Sbjct: 222 ALEENHGSVSEFEVKNSLNVTKATTTSSSQVLPLTSSP---------------------- 259

Query: 284 XTTFKPVEKASMVH 297
            TTFKP E +SMVH
Sbjct: 260 -TTFKPHENSSMVH 272


>Medtr7g024480.1 | transmembrane protein, putative | HC |
           chr7:8057325-8058800 | 20130731
          Length = 293

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 23/237 (9%)

Query: 2   SLSGLVIALSVAFGCFXXXXXXXXXXXXWWKKRRXX-XXXXXXDHSNDAKGLLNGVCWKA 60
           SLS + + LS+ FGC             WWKK+           + N  K L    CWK 
Sbjct: 3   SLSSVGLGLSIVFGCLLLALVAEVYYLLWWKKKIIKREIENDYGNGNPLKELFYMFCWKR 62

Query: 61  PSTTNSVTVRSSEPE---------NKSHEPDLELGKDVVGLKNFGEEGVECELMRLHN-- 109
           PST+   T   + PE         N  H+P ++  K+ +  K +GE+ ++ + M  H+  
Sbjct: 63  PSTSLRQT-GFTPPELCSSMRINDNFVHDPQVQTSKEFL-FKPYGEDVIDADYMMQHHHD 120

Query: 110 -LAGPPRFLFTIXXXXXXXXXXXXGRSRKGSRTRSLSDIMVATIDSPFLNPVAS----SP 164
            L G PRFLFTI            G+  K SR RSL D++   +++P+L P+AS    +P
Sbjct: 121 GLLGHPRFLFTIVEESKEDLESEDGKCGKDSRGRSLGDLL--DVETPYLTPIASPHFFTP 178

Query: 165 LKCSLDGLDSFKHQGFNPLFESSMESELNRFRSNSPPPKFKFLRDAEEKLYRRLIEE 221
           + CS      +   GFNPLFES+ ++E NR +S SPPPKFKFL++AEEKL R++ ++
Sbjct: 179 MNCS-PYCSPYNQHGFNPLFESTTDAEFNRLKS-SPPPKFKFLQEAEEKLRRKMQDD 233


>Medtr7g024480.2 | transmembrane protein, putative | HC |
           chr7:8057226-8058800 | 20130731
          Length = 237

 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 22/181 (12%)

Query: 57  CWKAPSTTNSVTVRSSEPE---------NKSHEPDLELGKDVVGLKNFGEEGVECELMRL 107
           CWK PST+   T  +  PE         N  H+P ++  K+ +  K +GE+ ++ + M  
Sbjct: 3   CWKRPSTSLRQTGFTP-PELCSSMRINDNFVHDPQVQTSKEFL-FKPYGEDVIDADYMMQ 60

Query: 108 HN---LAGPPRFLFTIXXXXXXXXXXXXGRSRKGSRTRSLSDIMVATIDSPFLNPVAS-- 162
           H+   L G PRFLFTI            G+  K SR RSL D++   +++P+L P+AS  
Sbjct: 61  HHHDGLLGHPRFLFTIVEESKEDLESEDGKCGKDSRGRSLGDLL--DVETPYLTPIASPH 118

Query: 163 --SPLKCSLDGLDSFKHQGFNPLFESSMESELNRFRSNSPPPKFKFLRDAEEKLYRRLIE 220
             +P+ CS      +   GFNPLFES+ ++E NR +S SPPPKFKFL++AEEKL R++ +
Sbjct: 119 FFTPMNCS-PYCSPYNQHGFNPLFESTTDAEFNRLKS-SPPPKFKFLQEAEEKLRRKMQD 176

Query: 221 E 221
           +
Sbjct: 177 D 177