Miyakogusa Predicted Gene
- Lj3g3v3177300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3177300.1 Non Characterized Hit- tr|I1LK48|I1LK48_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.34613 PE,70,0,no
description,Nucleotide-binding, alpha-beta plait; RRM,RNA recognition
motif domain; RNA-binding d,CUFF.45379.1
(244 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 287 5e-78
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 287 5e-78
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 287 5e-78
Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 131 5e-31
Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 108 5e-24
Medtr5g084370.1 | transmembrane protein, putative | HC | chr5:36... 66 3e-11
Medtr7g024150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 4e-11
Medtr5g041970.1 | RNA recognition motif protein | HC | chr5:1844... 65 8e-11
Medtr3g118240.1 | transmembrane protein, putative | LC | chr3:55... 62 6e-10
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 49 6e-06
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 48 7e-06
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 48 8e-06
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 177/265 (66%), Gaps = 23/265 (8%)
Query: 1 MSAGLDMTLDDLIKTNKKSGSGNFRG-------RSGPGPARRIPNRSGNRTAPYAATAKA 53
MSA LDMTLDD+IK NKKSGSGN RG SGPGPARRI NR+GNR APY+A AKA
Sbjct: 1 MSAALDMTLDDIIKNNKKSGSGNPRGGRSRPGPASGPGPARRILNRAGNRAAPYSA-AKA 59
Query: 54 PETAWQHDLYGDQALPPYPVA--HDARAPPSLETGTKLLISNLDYGVSNDDIKELFGEVG 111
PET WQHDLY DQ + RAP S+ETGTKL ISNLDYGVSNDDIKELF EVG
Sbjct: 60 PETTWQHDLYADQHVAAAAYPAAQGGRAP-SIETGTKLYISNLDYGVSNDDIKELFSEVG 118
Query: 112 DLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSV 171
DLKRHGV YDRSGRSKG+A VVFSRR DA+AAVKRYNNVQLDGKPMK+EIVG NIS+P
Sbjct: 119 DLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGA 178
Query: 172 PPALSGAFGNRIGVPQSXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219
P ++ GN G+PQS
Sbjct: 179 APVVNAPIGNFNGIPQSGQGRVGEFRGPGGRGQGIRRNRGRGRGSGGPRGGGRGGGRGRG 238
Query: 220 XDEKVSAEDLDADLEKYHAESMQLN 244
D+KVSAEDLDA+LEKYHAE+MQLN
Sbjct: 239 RDDKVSAEDLDAELEKYHAEAMQLN 263
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 177/265 (66%), Gaps = 23/265 (8%)
Query: 1 MSAGLDMTLDDLIKTNKKSGSGNFRG-------RSGPGPARRIPNRSGNRTAPYAATAKA 53
MSA LDMTLDD+IK NKKSGSGN RG SGPGPARRI NR+GNR APY+A AKA
Sbjct: 1 MSAALDMTLDDIIKNNKKSGSGNPRGGRSRPGPASGPGPARRILNRAGNRAAPYSA-AKA 59
Query: 54 PETAWQHDLYGDQALPPYPVA--HDARAPPSLETGTKLLISNLDYGVSNDDIKELFGEVG 111
PET WQHDLY DQ + RAP S+ETGTKL ISNLDYGVSNDDIKELF EVG
Sbjct: 60 PETTWQHDLYADQHVAAAAYPAAQGGRAP-SIETGTKLYISNLDYGVSNDDIKELFSEVG 118
Query: 112 DLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSV 171
DLKRHGV YDRSGRSKG+A VVFSRR DA+AAVKRYNNVQLDGKPMK+EIVG NIS+P
Sbjct: 119 DLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGA 178
Query: 172 PPALSGAFGNRIGVPQSXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219
P ++ GN G+PQS
Sbjct: 179 APVVNAPIGNFNGIPQSGQGRVGEFRGPGGRGQGIRRNRGRGRGSGGPRGGGRGGGRGRG 238
Query: 220 XDEKVSAEDLDADLEKYHAESMQLN 244
D+KVSAEDLDA+LEKYHAE+MQLN
Sbjct: 239 RDDKVSAEDLDAELEKYHAEAMQLN 263
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 177/265 (66%), Gaps = 23/265 (8%)
Query: 1 MSAGLDMTLDDLIKTNKKSGSGNFRG-------RSGPGPARRIPNRSGNRTAPYAATAKA 53
MSA LDMTLDD+IK NKKSGSGN RG SGPGPARRI NR+GNR APY+A AKA
Sbjct: 1 MSAALDMTLDDIIKNNKKSGSGNPRGGRSRPGPASGPGPARRILNRAGNRAAPYSA-AKA 59
Query: 54 PETAWQHDLYGDQALPPYPVA--HDARAPPSLETGTKLLISNLDYGVSNDDIKELFGEVG 111
PET WQHDLY DQ + RAP S+ETGTKL ISNLDYGVSNDDIKELF EVG
Sbjct: 60 PETTWQHDLYADQHVAAAAYPAAQGGRAP-SIETGTKLYISNLDYGVSNDDIKELFSEVG 118
Query: 112 DLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSV 171
DLKRHGV YDRSGRSKG+A VVFSRR DA+AAVKRYNNVQLDGKPMK+EIVG NIS+P
Sbjct: 119 DLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGA 178
Query: 172 PPALSGAFGNRIGVPQSXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219
P ++ GN G+PQS
Sbjct: 179 APVVNAPIGNFNGIPQSGQGRVGEFRGPGGRGQGIRRNRGRGRGSGGPRGGGRGGGRGRG 238
Query: 220 XDEKVSAEDLDADLEKYHAESMQLN 244
D+KVSAEDLDA+LEKYHAE+MQLN
Sbjct: 239 RDDKVSAEDLDAELEKYHAEAMQLN 263
>Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:29610838-29605718 | 20130731
Length = 291
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 93/143 (65%), Gaps = 11/143 (7%)
Query: 30 PGPARRIPNRSGNRTAPYA--ATAKAPET-AWQHDLYGDQALPPYPVAHDARAPPSLETG 86
G RR P R + YA + + P+T AWQ DL+ D + A +E
Sbjct: 57 TGAVRRGPLNVNTRASSYAIAKSIRRPKTLAWQSDLFED--------SLRAAGIQGVEAD 108
Query: 87 TKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKR 146
TKL +SNLD GV+N+DI+ELF E+G+LKR+ V YD++G GSA VV++RR+DA AA+KR
Sbjct: 109 TKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKR 168
Query: 147 YNNVQLDGKPMKVEIVGANISSP 169
YNNV LDGKPMK+EIVG N + P
Sbjct: 169 YNNVLLDGKPMKIEIVGTNSALP 191
>Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:7894145-7897152 | 20130731
Length = 315
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 105/176 (59%), Gaps = 18/176 (10%)
Query: 1 MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARRIPNRSGN-RTAPYAATAKA--PETA 57
M AGLDM+LD I T++++ S P R + RS + R PY+ + A
Sbjct: 1 MPAGLDMSLDQ-ITTHRRTTSNR--------PNRHLGVRSNSVRITPYSISHSQMLEREA 51
Query: 58 WQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHG 117
+ D P + D P + TKL +SNLD VSN+DI LF E G+L+ +
Sbjct: 52 LRRSNVDDV---PQEMVLDQ---PHQKPITKLYLSNLDDRVSNEDIHLLFSEEGELESYS 105
Query: 118 VDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSVPP 173
+ YD+ GRSKG+A VVF+R+++A+AA+KRYNN++LDGK +++E+VG ++ +P+ P
Sbjct: 106 IHYDQFGRSKGTAEVVFTRQSEALAALKRYNNMKLDGKTLQIELVGTSLVTPAAAP 161
>Medtr5g084370.1 | transmembrane protein, putative | HC |
chr5:36405886-36403983 | 20130731
Length = 198
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 104 KELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVG 163
K FG+ G+ + + + GSA VV++RR+DA AA+KRYNNV LDGKPMK+EIVG
Sbjct: 75 KHTFGD-GNTLPNRLKFHSCNLCVGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVG 133
Query: 164 ANISSP 169
N P
Sbjct: 134 TNSELP 139
>Medtr7g024150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:7912696-7913367 | 20130731
Length = 106
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 48/66 (72%)
Query: 106 LFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGAN 165
LF + +L+ + + YD+ G SKG+A V F+R +DA+AA++R N ++L GK +++E+VG
Sbjct: 29 LFSKNDELEGYSIHYDQFGESKGTAEVFFTRESDALAALRRCNQMKLYGKTLQIELVGTT 88
Query: 166 ISSPSV 171
+ +P++
Sbjct: 89 LVTPAL 94
>Medtr5g041970.1 | RNA recognition motif protein | HC |
chr5:18447811-18445882 | 20130731
Length = 86
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 36/48 (75%)
Query: 127 KGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSVPPA 174
KGSA VV++RR+DA A+KRYNNV LDGKPMK+EIVG N P A
Sbjct: 21 KGSAEVVYNRRSDAFTALKRYNNVLLDGKPMKIEIVGTNSELPVTARA 68
>Medtr3g118240.1 | transmembrane protein, putative | LC |
chr3:55351113-55354462 | 20130731
Length = 237
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 128 GSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSVPPALSGAFGNR 182
GS VV++RR+DA AA+KRYNNV LDGKPMK+EIVG N S SV ++ + NR
Sbjct: 118 GSFEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTN-SELSVTARVNVSAMNR 171
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 78 RAPP---SLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVV 133
R PP S + ++ + NL +GV N ++ LFGE G + V YDR SGRS+G V
Sbjct: 184 RGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVT 243
Query: 134 FSRRADAIAAVKRYNNVQLDGKPMKV 159
FS + +A++ + L+G+ ++V
Sbjct: 244 FSSADEVDSAIRTLDGADLNGRAIRV 269
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 78 RAPP---SLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVV 133
R PP S + ++ + NL +GV N ++ LFGE G + V YDR SGRS+G V
Sbjct: 184 RGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVT 243
Query: 134 FSRRADAIAAVKRYNNVQLDGKPMKV 159
FS + +A++ + L+G+ ++V
Sbjct: 244 FSSADEVDSAIRTLDGADLNGRAIRV 269
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 78 RAPPSLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDR-SGRSKGSAVVVFSR 136
R P + +G + + NL + V N +++LF E G ++ V YDR +GRS+G V S
Sbjct: 207 RQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSN 266
Query: 137 RADAIAAVKRYNNVQLDGKPMKVEI 161
A+ A+ + +G+ ++V +
Sbjct: 267 EAEMNDAIAALDGQSFNGRAIRVNV 291
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 86 GTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVK 145
G L + NLD V+++ + ELF E G + + D G S+GS V FS +A A+
Sbjct: 305 GANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALA 364
Query: 146 RYNNVQLDGKPMKV 159
N + GKP+ V
Sbjct: 365 EMNGKMVAGKPLYV 378
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 86 GTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVK 145
G L + NLD ++++ +KE+F E G + + + D +G S+GS V FS +A A+
Sbjct: 314 GLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALG 373
Query: 146 RYNNVQLDGKPMKVEI 161
N + KP+ V +
Sbjct: 374 EMNGKMIVSKPLYVAV 389