Miyakogusa Predicted Gene

Lj3g3v3166240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3166240.1 Non Characterized Hit- tr|K4B294|K4B294_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,97.56,5e-16,UCH,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2; Cysteine proteinases,NULL; UCH_2_1,Pepti,CUFF.45371.1
         (71 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g090190.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...    87   5e-18
Medtr3g087140.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...    80   4e-16

>Medtr8g090190.1 | ubiquitin carboxyl-terminal hydrolase | HC |
          chr8:37821953-37828258 | 20130731
          Length = 369

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/41 (95%), Positives = 39/41 (95%)

Query: 1  MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQVL 41
          MGA GSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQ L
Sbjct: 1  MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQAL 41


>Medtr3g087140.1 | ubiquitin carboxyl-terminal hydrolase | HC |
          chr3:39509881-39514966 | 20130731
          Length = 366

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 37/41 (90%)

Query: 1  MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQVL 41
          MG +GSKLEKALGD FPEGE YFGLENFGNTCYCNSVLQ L
Sbjct: 1  MGGSGSKLEKALGDNFPEGEHYFGLENFGNTCYCNSVLQAL 41