Miyakogusa Predicted Gene
- Lj3g3v3165170.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3165170.1 Non Characterized Hit- tr|J3L5N2|J3L5N2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G4,37.69,0.000000008,coiled-coil,NULL; seg,NULL; FAMILY NOT
NAMED,NULL; DUF966,Protein of unknown function DUF966,CUFF.45370.1
(423 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g063130.2 | auxin-regulated protein | HC | chr4:23360647-2... 459 e-129
Medtr4g063130.1 | auxin-regulated protein | HC | chr4:23360644-2... 446 e-125
Medtr4g057330.1 | auxin-regulated protein | HC | chr4:20983812-2... 164 1e-40
Medtr2g084275.1 | auxin-regulated protein | HC | chr2:35459148-3... 156 3e-38
Medtr1g115370.1 | DUF966 domain protein | HC | chr1:52069779-520... 145 6e-35
Medtr8g091300.1 | DUF966 domain protein | HC | chr8:38095364-380... 136 4e-32
Medtr2g062310.1 | DUF966 domain protein | HC | chr2:26306172-263... 89 9e-18
Medtr4g057330.2 | auxin-regulated protein | HC | chr4:20983812-2... 80 3e-15
>Medtr4g063130.2 | auxin-regulated protein | HC |
chr4:23360647-23365038 | 20130731
Length = 421
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 260/410 (63%), Positives = 286/410 (69%), Gaps = 30/410 (7%)
Query: 31 VWTEPKPKTTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMAT 90
VWTEPKPKT R+VSVVYYLSRNG LEHPHFMEV LSSPHGL+LKDVI RLN LRGKGM T
Sbjct: 23 VWTEPKPKTPRKVSVVYYLSRNGHLEHPHFMEVPLSSPHGLYLKDVIIRLNLLRGKGMPT 82
Query: 91 MYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILEHAGGGAGVAPHTSPQTQK 150
MYSWS+KRSYKNGFVWHDL+E+DFIYPTQG DYILKGSEILEH +
Sbjct: 83 MYSWSSKRSYKNGFVWHDLTESDFIYPTQGHDYILKGSEILEHE----------TTARPP 132
Query: 151 SEEESDFPAAITRRRNQSWGSMDLNEYRVYKSDSFGDSAGRVAEAATQTDDXXXXXXXXX 210
EEESD P ITRRRNQSW S+DLNEYRVYKS+ G++ A+A+TQT++
Sbjct: 133 LEEESDSPVVITRRRNQSWSSIDLNEYRVYKSEPLGENIA--ADASTQTEEKRRRRRVLR 190
Query: 211 XXXXXXXXXXXXXXXXXXXX-XXRVPHQSTELSREEIXXXXXXXXXEX------------ 257
+QSTELSREEI E
Sbjct: 191 EEDEEQEEEEKEKNDEIENEGETENQNQSTELSREEISPPPSDSSPETLGTLMKVDGRLG 250
Query: 258 -XXXXXXXXXXXXXXXXXXXXSSVLLQLLSCGAVSFKE-SGAGAGKDQGFSLVGHYKSRL 315
SSVLLQLLSCGAVSFKE SGA +GKDQ FSLVGHYKSRL
Sbjct: 251 LRSVPKENPTVESCPSGRMRASSVLLQLLSCGAVSFKEGSGASSGKDQRFSLVGHYKSRL 310
Query: 316 PRGAGNHGGKEVGTLMEIPDLSRVRLEDKEYFSGSLIETQKVETPSLKRSNSYNADSGSR 375
PRG GNH GKEVGTL+EIPDL+RVRLEDKEYFSGSLIET+KVE P+ KRS+SYNADS SR
Sbjct: 311 PRGGGNHVGKEVGTLVEIPDLNRVRLEDKEYFSGSLIETKKVEAPAFKRSSSYNADS-SR 369
Query: 376 LQMIEHEGEVVRAKCIPRKSKTLTTKKEEGT--SMDIVSRSQHGSKRFDG 423
LQ++EHEG++VRAKCIPRKSKTL TKKEEGT SMD VSRSQHGSKRF+G
Sbjct: 370 LQIMEHEGDMVRAKCIPRKSKTLLTKKEEGTSSSMDSVSRSQHGSKRFEG 419
>Medtr4g063130.1 | auxin-regulated protein | HC |
chr4:23360644-23365038 | 20130731
Length = 422
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 260/410 (63%), Positives = 286/410 (69%), Gaps = 29/410 (7%)
Query: 31 VWTEPKPKTTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMAT 90
VWTEPKPKT R+VSVVYYLSRNG LEHPHFMEV LSSPHGL+LKDVI RLN LRGKGM T
Sbjct: 23 VWTEPKPKTPRKVSVVYYLSRNGHLEHPHFMEVPLSSPHGLYLKDVIIRLNLLRGKGMPT 82
Query: 91 MYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILEHAGGGAGVAPHTSPQTQK 150
MYSWS+KRSYKNGFVWHDL+E+DFIYPTQG DYILKGSEILEH +
Sbjct: 83 MYSWSSKRSYKNGFVWHDLTESDFIYPTQGHDYILKGSEILEHE----------TTARPP 132
Query: 151 SEEESDFPAAITRRRNQSWGSMDLNEYRVYKSDSFGDSAGRVAEAATQTDDXXXXXXXXX 210
EEESD P ITRRRNQSW S+DLNEYRVYKS+ G++ A+A+TQT++
Sbjct: 133 LEEESDSPVVITRRRNQSWSSIDLNEYRVYKSEPLGENIA--ADASTQTEEKRRRRRVLR 190
Query: 211 XXXXXXXXXXXXXXXXXXXX-XXRVPHQSTELSREEIXXXXXXXXXEX------------ 257
+QSTELSREEI E
Sbjct: 191 EEDEEQEEEEKEKNDEIENEGETENQNQSTELSREEISPPPSDSSPETLGTLMKVDGRLG 250
Query: 258 -XXXXXXXXXXXXXXXXXXXXSSVLLQLLSCGAVSFKE-SGAGAGKDQGFSLVGHYKSRL 315
SSVLLQLLSCGAVSFKE SGA +GKDQ FSLVGHYKSRL
Sbjct: 251 LRSVPKENPTVESCPSGRMRASSVLLQLLSCGAVSFKEGSGASSGKDQRFSLVGHYKSRL 310
Query: 316 PRGAGNHGGKEVGTLMEIPDLSRVRLEDKEYFSGSLIETQKVETPSLKRSNSYNADSGSR 375
PRG GNH GKEVGTL+EIPDL+RVRLEDKEYFSGSLIET+KVE P+ KRS+SYNADS SR
Sbjct: 311 PRGGGNHVGKEVGTLVEIPDLNRVRLEDKEYFSGSLIETKKVEAPAFKRSSSYNADSSSR 370
Query: 376 LQMIEHEGEVVRAKCIPRKSKTLTTKKEEGT--SMDIVSRSQHGSKRFDG 423
LQ++EHEG++VRAKCIPRKSKTL TKKEEGT SMD VSRSQHGSKRF+G
Sbjct: 371 LQIMEHEGDMVRAKCIPRKSKTLLTKKEEGTSSSMDSVSRSQHGSKRFEG 420
>Medtr4g057330.1 | auxin-regulated protein | HC |
chr4:20983812-20980996 | 20130731
Length = 514
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 118/210 (56%), Gaps = 46/210 (21%)
Query: 31 VWTEPKPKTTR--RVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGM 88
VWTE PK +V V+YYL RN QLEHPHFMEV LSSP GL+L+DVID+LN LRG+GM
Sbjct: 18 VWTEKAPKYQHNLKVPVIYYLCRNRQLEHPHFMEVPLSSPDGLYLRDVIDKLNALRGRGM 77
Query: 89 ATMYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILEHAGGG----------A 138
A++YSWS+KRSYKNGFVWHDL E+D I P G +Y+LKGSE+ + +
Sbjct: 78 ASLYSWSSKRSYKNGFVWHDLCEDDLIQPAHGNEYVLKGSELFDESNSDRFSPINDVKIQ 137
Query: 139 GVAPHTSPQTQKSEEESDFPAAITRRRN-----------QSWGSMD-------------- 173
V P + +S +E+ +++ + Q GS D
Sbjct: 138 SVKMLPGPSSCRSHDEASSSSSMNGKETRYSQDDEQSHEQHTGSSDVSPESRAEKTGPLS 197
Query: 174 --LNEYRVYKSDSFGDSAGRVAEAATQTDD 201
L EY++YK+D D A+TQT+D
Sbjct: 198 LALTEYKIYKADGLAD-------ASTQTED 220
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 82/161 (50%), Gaps = 23/161 (14%)
Query: 278 SSVLLQLLSCGAVSFKESGAGAGKDQGFSLVGHYKSRL-------PRGAGNHGGKEVGTL 330
S++L+QL+SCG++S K + F L+ YK R P + + E L
Sbjct: 320 SNLLMQLISCGSISVK--------NHSFGLIPSYKPRFSHSKFPSPLFSTSFVLGEYDCL 371
Query: 331 MEIPDLSRVRLEDKEYFSGSLIETQKVETPS---LKRSNSYNADSGSRLQMI---EHEGE 384
+E P L +RLEDKEYFSGSLIET+ E + LKRS+SYN + ++ Q E E
Sbjct: 372 VENPKLMNLRLEDKEYFSGSLIETKLKEGDARNVLKRSSSYNNERTNKEQKPKENEEEPS 431
Query: 385 VVRAKCIPRKSKTLTTKKEEGTSM--DIVSRSQHGSKRFDG 423
+KCIPR K TK G SM I + S R DG
Sbjct: 432 SGHSKCIPRSIKASLTKHPRGESMRSPISEGPRTSSDRIDG 472
>Medtr2g084275.1 | auxin-regulated protein | HC |
chr2:35459148-35463284 | 20130731
Length = 508
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 114/209 (54%), Gaps = 42/209 (20%)
Query: 31 VWTEPKPK--TTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGM 88
VW E PK R+V VVYYL RN QLEHPHFMEV +SSP GL L+DVI +L+ LRG+GM
Sbjct: 19 VWKEKPPKYYKNRKVPVVYYLCRNRQLEHPHFMEVPISSPDGLFLRDVIHKLDALRGRGM 78
Query: 89 ATMYSWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEILEHAGGGAGVAPHTS--- 145
A +YSWS KRSYKNG+VWHDLSE+D I P G +Y+LKGSE+ + +P ++
Sbjct: 79 ADLYSWSCKRSYKNGYVWHDLSEDDLILPAHGNEYVLKGSELFCESNSDR-FSPISNVKL 137
Query: 146 --------PQTQKSEEESDFPAAITRRRN------------QSWGSMD------------ 173
P + +S +E ++ R Q GS D
Sbjct: 138 QSLKRLPEPVSCRSHDEVSSSSSSMNEREGRNSQEDEISPRQHTGSSDISPESSDGKSDS 197
Query: 174 ----LNEYRVYKSDSFGDSAGRVAEAATQ 198
L EY++YK+D D++ + E A +
Sbjct: 198 QSLPLTEYKIYKTDRLADASTQTEECAAK 226
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 18/107 (16%)
Query: 278 SSVLLQLLSCGAVSFKESGAGAGKDQGFSLVGHYKSRL-------PRGAGNHGGKEVGTL 330
S++L+QL+SCG++S K + L+ YK+R P + + E+ +
Sbjct: 324 SNLLMQLISCGSISVK--------NHSLDLIPSYKARFSHSKFPSPLFSSSVMLGELDCI 375
Query: 331 MEIPDLSRVRLEDKEYFSGSLIETQKVETPS---LKRSNSYNADSGS 374
P ++ +R++DKEYFSGSL+E++ LKRS+S+NA+ S
Sbjct: 376 GGNPKVTSLRMDDKEYFSGSLVESKMAMEDGHNVLKRSSSFNAERTS 422
>Medtr1g115370.1 | DUF966 domain protein | HC |
chr1:52069779-52068406 | 20130731
Length = 254
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 107/161 (66%), Gaps = 1/161 (0%)
Query: 42 RVSVVYYLSRNGQLEHPHFMEVSLSSPHG-LHLKDVIDRLNQLRGKGMATMYSWSAKRSY 100
+V V+YYLSRNGQLEHPH M VS+SS HG L L+DVI+RL+ LRG+G+A MYSWS KRSY
Sbjct: 13 KVPVIYYLSRNGQLEHPHLMYVSISSSHGTLCLQDVINRLSFLRGQGIANMYSWSTKRSY 72
Query: 101 KNGFVWHDLSENDFIYPTQGQDYILKGSEILEHAGGGAGVAPHTSPQTQKSEEESDFPAA 160
+NGFVW DLSEND IYP+ +Y+LKG+ ++E S + KS E++ ++
Sbjct: 73 RNGFVWQDLSENDLIYPSSSHEYVLKGTLLIEEPSSFRSYETILSMPSSKSSNETNNSSS 132
Query: 161 ITRRRNQSWGSMDLNEYRVYKSDSFGDSAGRVAEAATQTDD 201
+ S +Y++YK+ ++ + A + A+TQT++
Sbjct: 133 MDADSPSSTAKGSRRDYKLYKATTYREFAEKATNASTQTEE 173
>Medtr8g091300.1 | DUF966 domain protein | HC |
chr8:38095364-38096989 | 20130731
Length = 409
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
Query: 36 KPKTTRRVSVVYYLSRNGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMATMYSWS 95
K K R+V VVYYLSRNG LEHPHFMEV+LS L LKDV DRL LRG GM + YSWS
Sbjct: 25 KVKPIRKVQVVYYLSRNGLLEHPHFMEVTLSPNQPLRLKDVFDRLMALRGSGMPSQYSWS 84
Query: 96 AKRSYKNGFVWHDLSENDFIYPTQ-GQDYILKGSEILE 132
KR+YK+G+VWHDL+ D I+P++ G +Y+LKGSE++E
Sbjct: 85 TKRNYKSGYVWHDLALKDIIHPSEGGAEYVLKGSELVE 122
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 71/139 (51%), Gaps = 32/139 (23%)
Query: 279 SVLLQLLSCGAVSFKESGA--GAGKDQG-FSLVGHYKSRLPRGAGN----HGGKEVGTLM 331
SVLLQL++CG+ SGA A + +G S VG R R + + + G E +
Sbjct: 268 SVLLQLIACGS-----SGAEMKAKQQEGRLSNVGTTSKR--RESVDEEKVYSGDEDICVT 320
Query: 332 EIPDL-SRVRLEDKEYFSGSLIETQKVE------TPSLKRSNSYNADSGSRLQM------ 378
E P L ++ E+KEYFSGS++E+ K P LK+SNSYN + SRL M
Sbjct: 321 ENPRLMGNLQSEEKEYFSGSIVESMKANRVAFQAEPVLKKSNSYNEERRSRLGMDEVKLK 380
Query: 379 --IEHEGEV---VRAKCIP 392
E + E V+ KCIP
Sbjct: 381 ETKEEKREAKGGVKEKCIP 399
>Medtr2g062310.1 | DUF966 domain protein | HC |
chr2:26306172-26303022 | 20130731
Length = 427
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 34 EPKPKTTRRVSVVYYLSR-NGQLEHPHFMEVSLSSPHGLHLKDVIDRLNQLRGKGMATMY 92
E K RR+ ++Y+LS G EHPH + V + +G++L+D+ L ++RG+ + +
Sbjct: 2 ETKGGEVRRLHIIYFLSHMGGHAEHPHLIRVLHLARNGVYLRDIKRWLGEVRGRDLPESF 61
Query: 93 SWSAKRSYKNGFVWHDLSENDFIYPTQGQDYILKGSEI 130
+WS KR YK+G+VW DL ++D I P +Y+LKGS+I
Sbjct: 62 AWSYKRRYKSGYVWQDLMDDDLITPISDNEYVLKGSQI 99
>Medtr4g057330.2 | auxin-regulated protein | HC |
chr4:20983812-20980996 | 20130731
Length = 409
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 82/161 (50%), Gaps = 23/161 (14%)
Query: 278 SSVLLQLLSCGAVSFKESGAGAGKDQGFSLVGHYKSRL-------PRGAGNHGGKEVGTL 330
S++L+QL+SCG++S K + F L+ YK R P + + E L
Sbjct: 215 SNLLMQLISCGSISVK--------NHSFGLIPSYKPRFSHSKFPSPLFSTSFVLGEYDCL 266
Query: 331 MEIPDLSRVRLEDKEYFSGSLIETQKVETPS---LKRSNSYNADSGSRLQMI---EHEGE 384
+E P L +RLEDKEYFSGSLIET+ E + LKRS+SYN + ++ Q E E
Sbjct: 267 VENPKLMNLRLEDKEYFSGSLIETKLKEGDARNVLKRSSSYNNERTNKEQKPKENEEEPS 326
Query: 385 VVRAKCIPRKSKTLTTKKEEGTSM--DIVSRSQHGSKRFDG 423
+KCIPR K TK G SM I + S R DG
Sbjct: 327 SGHSKCIPRSIKASLTKHPRGESMRSPISEGPRTSSDRIDG 367