Miyakogusa Predicted Gene

Lj3g3v3153010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3153010.1 Non Characterized Hit- tr|D8TJX3|D8TJX3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,38.36,8e-19,RECA_2,DNA recombination/repair protein RecA/RadB,
ATP-binding domain; no description,NULL; Rad51,DN,CUFF.45354.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g062540.6 | DNA repair protein RAD51 | HC | chr4:23254009-...   334   4e-92
Medtr4g062540.4 | DNA repair protein RAD51 | HC | chr4:23254009-...   334   4e-92
Medtr4g062540.8 | DNA repair protein RAD51 | HC | chr4:23254009-...   328   3e-90
Medtr4g062540.5 | DNA repair protein RAD51 | HC | chr4:23254009-...   317   7e-87
Medtr4g062540.2 | DNA repair protein RAD51 | HC | chr4:23254009-...   316   1e-86
Medtr4g062540.1 | DNA repair protein RAD51 | HC | chr4:23254009-...   316   1e-86
Medtr4g062540.3 | DNA repair protein RAD51 | HC | chr4:23254009-...   315   1e-86
Medtr4g062540.9 | DNA repair protein RAD51 | HC | chr4:23254009-...   270   8e-73
Medtr4g062540.7 | DNA repair protein RAD51 | HC | chr4:23254009-...   270   8e-73
Medtr2g093050.1 | DNA repair RAD51-like protein | HC | chr2:3962...    65   6e-11
Medtr8g461220.1 | DNA repair and recombination protein | HC | ch...    51   6e-07
Medtr4g124560.1 | DNA repair RAD51-like protein | HC | chr4:5155...    48   8e-06

>Medtr4g062540.6 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251049 | 20130731
          Length = 264

 Score =  334 bits (856), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 182/207 (87%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS NQADHR LQ +L RI
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVNQADHRLLQNILDRI 180

Query: 181 ICYSVFDIYQMFDVLHRLKINLRSEVL 207
           ICY VFD+YQMFD+LH+LKINLRS+++
Sbjct: 181 ICYPVFDVYQMFDLLHQLKINLRSQIV 207


>Medtr4g062540.4 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 322

 Score =  334 bits (856), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 182/207 (87%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS NQADHR LQ +L RI
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVNQADHRLLQNILDRI 180

Query: 181 ICYSVFDIYQMFDVLHRLKINLRSEVL 207
           ICY VFD+YQMFD+LH+LKINLRS+++
Sbjct: 181 ICYPVFDVYQMFDLLHQLKINLRSQIV 207


>Medtr4g062540.8 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251291 | 20130731
          Length = 207

 Score =  328 bits (840), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 160/214 (74%), Positives = 181/214 (84%), Gaps = 7/214 (3%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS N       Q +L RI
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVN-------QNILDRI 173

Query: 181 ICYSVFDIYQMFDVLHRLKINLRSEVLIDWNICS 214
           ICY VFD+YQMFD+LH+LKINLRS+V ID NIC+
Sbjct: 174 ICYPVFDVYQMFDLLHQLKINLRSQVFIDVNICT 207


>Medtr4g062540.5 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 265

 Score =  317 bits (811), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 176/207 (85%), Gaps = 7/207 (3%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS N       Q +L RI
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVN-------QNILDRI 173

Query: 181 ICYSVFDIYQMFDVLHRLKINLRSEVL 207
           ICY VFD+YQMFD+LH+LKINLRS+++
Sbjct: 174 ICYPVFDVYQMFDLLHQLKINLRSQIV 200


>Medtr4g062540.2 | DNA repair protein RAD51 | HC |
           chr4:23254009-23249148 | 20130731
          Length = 242

 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 176/207 (85%), Gaps = 7/207 (3%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS N       Q +L RI
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVN-------QNILDRI 173

Query: 181 ICYSVFDIYQMFDVLHRLKINLRSEVL 207
           ICY VFD+YQMFD+LH+LKINLRS+++
Sbjct: 174 ICYPVFDVYQMFDLLHQLKINLRSQIV 200


>Medtr4g062540.1 | DNA repair protein RAD51 | HC |
           chr4:23254009-23246309 | 20130731
          Length = 315

 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 176/207 (85%), Gaps = 7/207 (3%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS N       Q +L RI
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVN-------QNILDRI 173

Query: 181 ICYSVFDIYQMFDVLHRLKINLRSEVL 207
           ICY VFD+YQMFD+LH+LKINLRS+++
Sbjct: 174 ICYPVFDVYQMFDLLHQLKINLRSQIV 200


>Medtr4g062540.3 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251049 | 20130731
          Length = 257

 Score =  315 bits (808), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 176/207 (85%), Gaps = 7/207 (3%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS N       Q +L RI
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVN-------QNILDRI 173

Query: 181 ICYSVFDIYQMFDVLHRLKINLRSEVL 207
           ICY VFD+YQMFD+LH+LKINLRS+++
Sbjct: 174 ICYPVFDVYQMFDLLHQLKINLRSQIV 200


>Medtr4g062540.9 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251447 | 20130731
          Length = 194

 Score =  270 bits (690), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 146/167 (87%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQ 167
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS NQ
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVNQ 167


>Medtr4g062540.7 | DNA repair protein RAD51 | HC |
           chr4:23254009-23251447 | 20130731
          Length = 194

 Score =  270 bits (690), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 146/167 (87%)

Query: 1   MAPLKSLEIEYPLVDSNFQNFCASHAIFSVEDFLLHDLDTLIAFASNHPTSQRLKQGIDQ 60
           MAPL SL  EYPL+DSNFQ FCASHAI+SVEDFLLHDLD L A A+NH  S+RLKQGI Q
Sbjct: 1   MAPLNSLSKEYPLIDSNFQTFCASHAIYSVEDFLLHDLDALFASAANHSNSERLKQGIHQ 60

Query: 61  LLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSSSGK 120
           LL I+DAL PP+L G QL+ DAKRNKHV STGC+GIDALLGGGLR GQLTELVGPSSSGK
Sbjct: 61  LLLIVDALHPPVLNGLQLIEDAKRNKHVFSTGCEGIDALLGGGLRVGQLTELVGPSSSGK 120

Query: 121 TQVCLLSAATIARHKSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQ 167
           TQVCL+S++T+A++K SVIYLDTGNSFSPQRIA+FVGQS D VS NQ
Sbjct: 121 TQVCLMSSSTVAKNKCSVIYLDTGNSFSPQRIAYFVGQSSDYVSVNQ 167


>Medtr2g093050.1 | DNA repair RAD51-like protein | HC |
           chr2:39621140-39628196 | 20130731
          Length = 436

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 70  PPLLTGSQLLADAKRNKHV---LSTGCDGIDALLGGGLREGQLTELVGPSSSGKTQVCL- 125
           PP  T   L+    RN+ +   L T   G+D  L GG+  G +TELVGP   GKTQ CL 
Sbjct: 62  PPCQTALLLMEQRVRNESLAGHLPTQLKGLDEALCGGIPFGVVTELVGPPGIGKTQFCLK 121

Query: 126 --LSAATIARH---KSSVIYLDTGNSFSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRI 180
             L A+    +      VIY+D  + FS +R+     +S+  + H +      QE+ GRI
Sbjct: 122 LSLLASLPVNYGGLDGRVIYIDVESKFSSKRLIEIGTKSFPEIFHKKGMA---QEMAGRI 178

Query: 181 ICYSVFDIYQMFDVLHRLKINL 202
           +      + +  + L R+K++L
Sbjct: 179 LILRPTSLSEFAESLQRIKVSL 200


>Medtr8g461220.1 | DNA repair and recombination protein | HC |
           chr8:21510596-21499546 | 20130731
          Length = 418

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 87  HVLSTGCDGIDALLGGGLREGQLTELVGPSSSGKTQVCLLSAATIARHKSSVIYLDTGNS 146
               +GC  +D  LGGGL +G++ E+ GP SSGKT + L + A + +   + + +D  ++
Sbjct: 99  ETFPSGCLALDFALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHA 158

Query: 147 FSPQRIAHFVGQSYDSVSHNQADHRPLQEVLGRIICYS 184
           F P   +  VG   +++   Q DH  +   +   +C S
Sbjct: 159 FDPA-YSKAVGVDVENLIVCQPDHGEMALEIADRMCRS 195


>Medtr4g124560.1 | DNA repair RAD51-like protein | HC |
           chr4:51555032-51558129 | 20130731
          Length = 341

 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 58  IDQLLSIIDALRPPLLTGSQLLADAKRNKHVLSTGCDGIDALLGGGLREGQLTELVGPSS 117
           +D+++     L P   T +  L   + +   ++TG   +D +L GG+  G +TEL G   
Sbjct: 73  VDKIIEAAGKLVPMGFTSASELHAQRESIIQITTGSRELDKILEGGIETGSITELYGEFR 132

Query: 118 SGKTQVCLLSAATI------ARHKSSVIYLDTGNSFSPQRI 152
           SGKTQ+C     T          +   +Y+D   +F PQR+
Sbjct: 133 SGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRL 173