Miyakogusa Predicted Gene

Lj3g3v3118700.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3118700.1 Non Characterized Hit- tr|I1KDR3|I1KDR3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16337
PE,84.75,5e-19,Proteasom_PSMB,26S proteasome non-ATPase regulatory
subunit 5; 26S PROTEASOME NON-ATPASE REGULATORY ,CUFF.45329.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g061280.1 | 26S proteasome non-ATPase regulatory subunit 5...   229   7e-61
Medtr8g058790.1 | 26S proteasome non-ATPase regulatory subunit 5...   229   7e-61

>Medtr8g061280.1 | 26S proteasome non-ATPase regulatory subunit 5 |
           HC | chr8:21093447-21073906 | 20130731
          Length = 526

 Score =  229 bits (583), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 117/134 (87%), Gaps = 2/134 (1%)

Query: 1   MDDPS--QLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVAC 58
           MD+ S  QLLQAATDFANYPG  SDDSA DFLNRFPLPLIINALQTQ DVPGLE TLV C
Sbjct: 1   MDEQSSQQLLQAATDFANYPGSHSDDSATDFLNRFPLPLIINALQTQFDVPGLETTLVVC 60

Query: 59  LESIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAHLIAE 118
           LE +FKTK GASLIPQYM FVQVGLQ+DSQAVRSLACKTVT LL+NLDN + VAAHLI E
Sbjct: 61  LERLFKTKFGASLIPQYMQFVQVGLQSDSQAVRSLACKTVTSLLENLDNSYTVAAHLIKE 120

Query: 119 FNIYPLLLDCLIKG 132
           FNIYPLLLDCLI G
Sbjct: 121 FNIYPLLLDCLING 134


>Medtr8g058790.1 | 26S proteasome non-ATPase regulatory subunit 5 |
           HC | chr8:20307115-20287519 | 20130731
          Length = 526

 Score =  229 bits (583), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 117/134 (87%), Gaps = 2/134 (1%)

Query: 1   MDDPS--QLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVAC 58
           MD+ S  QLLQAATDFANYPG  SDDSA DFLNRFPLPLIINALQTQ DVPGLE TLV C
Sbjct: 1   MDEQSSQQLLQAATDFANYPGSHSDDSATDFLNRFPLPLIINALQTQFDVPGLETTLVVC 60

Query: 59  LESIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAHLIAE 118
           LE +FKTK GASLIPQYM FVQVGLQ+DSQAVRSLACKTVT LL+NLDN + VAAHLI E
Sbjct: 61  LERLFKTKFGASLIPQYMQFVQVGLQSDSQAVRSLACKTVTSLLENLDNSYTVAAHLIKE 120

Query: 119 FNIYPLLLDCLIKG 132
           FNIYPLLLDCLI G
Sbjct: 121 FNIYPLLLDCLING 134