Miyakogusa Predicted Gene
- Lj3g3v3118700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3118700.1 Non Characterized Hit- tr|I1KDR3|I1KDR3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.16337
PE,84.75,5e-19,Proteasom_PSMB,26S proteasome non-ATPase regulatory
subunit 5; 26S PROTEASOME NON-ATPASE REGULATORY ,CUFF.45329.1
(132 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g061280.1 | 26S proteasome non-ATPase regulatory subunit 5... 229 7e-61
Medtr8g058790.1 | 26S proteasome non-ATPase regulatory subunit 5... 229 7e-61
>Medtr8g061280.1 | 26S proteasome non-ATPase regulatory subunit 5 |
HC | chr8:21093447-21073906 | 20130731
Length = 526
Score = 229 bits (583), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/134 (83%), Positives = 117/134 (87%), Gaps = 2/134 (1%)
Query: 1 MDDPS--QLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVAC 58
MD+ S QLLQAATDFANYPG SDDSA DFLNRFPLPLIINALQTQ DVPGLE TLV C
Sbjct: 1 MDEQSSQQLLQAATDFANYPGSHSDDSATDFLNRFPLPLIINALQTQFDVPGLETTLVVC 60
Query: 59 LESIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAHLIAE 118
LE +FKTK GASLIPQYM FVQVGLQ+DSQAVRSLACKTVT LL+NLDN + VAAHLI E
Sbjct: 61 LERLFKTKFGASLIPQYMQFVQVGLQSDSQAVRSLACKTVTSLLENLDNSYTVAAHLIKE 120
Query: 119 FNIYPLLLDCLIKG 132
FNIYPLLLDCLI G
Sbjct: 121 FNIYPLLLDCLING 134
>Medtr8g058790.1 | 26S proteasome non-ATPase regulatory subunit 5 |
HC | chr8:20307115-20287519 | 20130731
Length = 526
Score = 229 bits (583), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/134 (83%), Positives = 117/134 (87%), Gaps = 2/134 (1%)
Query: 1 MDDPS--QLLQAATDFANYPGVQSDDSARDFLNRFPLPLIINALQTQVDVPGLENTLVAC 58
MD+ S QLLQAATDFANYPG SDDSA DFLNRFPLPLIINALQTQ DVPGLE TLV C
Sbjct: 1 MDEQSSQQLLQAATDFANYPGSHSDDSATDFLNRFPLPLIINALQTQFDVPGLETTLVVC 60
Query: 59 LESIFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLDNLDNDHKVAAHLIAE 118
LE +FKTK GASLIPQYM FVQVGLQ+DSQAVRSLACKTVT LL+NLDN + VAAHLI E
Sbjct: 61 LERLFKTKFGASLIPQYMQFVQVGLQSDSQAVRSLACKTVTSLLENLDNSYTVAAHLIKE 120
Query: 119 FNIYPLLLDCLIKG 132
FNIYPLLLDCLI G
Sbjct: 121 FNIYPLLLDCLING 134