Miyakogusa Predicted Gene

Lj3g3v3097580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3097580.2 Non Characterized Hit- tr|I1M4P3|I1M4P3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22757
PE,82.28,0,RRM_1,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; RING/U-box,NULL; SUBFAMILY NOT NAM,CUFF.45309.2
         (333 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein...   575   e-164
Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein...   575   e-164
Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   575   e-164
Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   556   e-159
Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein...   556   e-159
Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein...   556   e-159
Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   423   e-118
Medtr6g008950.1 | anti-virus transcriptional factor, putative | ...    58   1e-08

>Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596011-22605283 | 20130731
          Length = 1042

 Score =  575 bits (1483), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 271/334 (81%), Positives = 296/334 (88%), Gaps = 2/334 (0%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSDEGERTCPLCAEEMDLTDQQLKPC+CGYEICVWCWHHIMDMAEKDDT+GRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXX-XXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLN 119
           DK+KIVG AA CERL++E+++E             DGRKQLSSVRVIQRNLVYIVGLPL+
Sbjct: 61  DKEKIVGTAAKCERLLNEMNLEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLD 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQ+REYF QYGKVLKVSMSRTAAGVIQQFPN+TCSVYITYS EEE+IRCIQNVH
Sbjct: 121 LADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSSEEESIRCIQNVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GFILEGRPLRACFGTTKYCHAWLRNAPC NPDCLYLHE+GSQEDSF+KDEIISAYT SRV
Sbjct: 181 GFILEGRPLRACFGTTKYCHAWLRNAPCINPDCLYLHEVGSQEDSFTKDEIISAYT-SRV 239

Query: 240 QQITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVA 299
           QQITG  N++ RRSGNVLPPP+DD TNNS+ KPI+KSA +N    VR SPPNGI GR+V+
Sbjct: 240 QQITGVTNSMQRRSGNVLPPPLDDWTNNSTEKPIVKSAPTNSVCAVRSSPPNGINGRHVS 299

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKPDT 333
           LP SAAWGTQ T+C PPVGG S+P+  S PKPDT
Sbjct: 300 LPTSAAWGTQTTSCHPPVGGLSHPSVLSKPKPDT 333


>Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596005-22605283 | 20130731
          Length = 1042

 Score =  575 bits (1483), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 271/334 (81%), Positives = 296/334 (88%), Gaps = 2/334 (0%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSDEGERTCPLCAEEMDLTDQQLKPC+CGYEICVWCWHHIMDMAEKDDT+GRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXX-XXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLN 119
           DK+KIVG AA CERL++E+++E             DGRKQLSSVRVIQRNLVYIVGLPL+
Sbjct: 61  DKEKIVGTAAKCERLLNEMNLEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLD 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQ+REYF QYGKVLKVSMSRTAAGVIQQFPN+TCSVYITYS EEE+IRCIQNVH
Sbjct: 121 LADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSSEEESIRCIQNVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GFILEGRPLRACFGTTKYCHAWLRNAPC NPDCLYLHE+GSQEDSF+KDEIISAYT SRV
Sbjct: 181 GFILEGRPLRACFGTTKYCHAWLRNAPCINPDCLYLHEVGSQEDSFTKDEIISAYT-SRV 239

Query: 240 QQITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVA 299
           QQITG  N++ RRSGNVLPPP+DD TNNS+ KPI+KSA +N    VR SPPNGI GR+V+
Sbjct: 240 QQITGVTNSMQRRSGNVLPPPLDDWTNNSTEKPIVKSAPTNSVCAVRSSPPNGINGRHVS 299

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKPDT 333
           LP SAAWGTQ T+C PPVGG S+P+  S PKPDT
Sbjct: 300 LPTSAAWGTQTTSCHPPVGGLSHPSVLSKPKPDT 333


>Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596008-22605283 | 20130731
          Length = 1042

 Score =  575 bits (1483), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 271/334 (81%), Positives = 296/334 (88%), Gaps = 2/334 (0%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSDEGERTCPLCAEEMDLTDQQLKPC+CGYEICVWCWHHIMDMAEKDDT+GRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXX-XXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLN 119
           DK+KIVG AA CERL++E+++E             DGRKQLSSVRVIQRNLVYIVGLPL+
Sbjct: 61  DKEKIVGTAAKCERLLNEMNLEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLD 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQ+REYF QYGKVLKVSMSRTAAGVIQQFPN+TCSVYITYS EEE+IRCIQNVH
Sbjct: 121 LADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSSEEESIRCIQNVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GFILEGRPLRACFGTTKYCHAWLRNAPC NPDCLYLHE+GSQEDSF+KDEIISAYT SRV
Sbjct: 181 GFILEGRPLRACFGTTKYCHAWLRNAPCINPDCLYLHEVGSQEDSFTKDEIISAYT-SRV 239

Query: 240 QQITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVA 299
           QQITG  N++ RRSGNVLPPP+DD TNNS+ KPI+KSA +N    VR SPPNGI GR+V+
Sbjct: 240 QQITGVTNSMQRRSGNVLPPPLDDWTNNSTEKPIVKSAPTNSVCAVRSSPPNGINGRHVS 299

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKPDT 333
           LP SAAWGTQ T+C PPVGG S+P+  S PKPDT
Sbjct: 300 LPTSAAWGTQTTSCHPPVGGLSHPSVLSKPKPDT 333


>Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score =  556 bits (1434), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 260/334 (77%), Positives = 288/334 (86%), Gaps = 6/334 (1%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSDEGERTCPLCAEEMDLTDQQL+PCKCGY+ICVWCWHHIMDMAEKD+TEGRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPY 60

Query: 61  DKKKIVGMAATCERLVSEIHME-XXXXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLN 119
           DK+KIVGMAA CERLV+E+HME             DGRKQLS+VRVI+RNLVYIVGLPL+
Sbjct: 61  DKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLD 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQRREYF QYGKVLKVSMSRTAAGV+QQFPN+TCSVYITYSKEEEAIRCIQNVH
Sbjct: 121 LADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GF+LE RPLRACFGTTKYCHAWLRN PCSNPDC+YLHEIGSQEDSF+KDE++SAYTRS +
Sbjct: 181 GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHI 240

Query: 240 QQITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVA 299
           QQITG V N+ RRSGNVLPPP+DDCT+N+SGKP +K++SSN   T R  PPNGI  + +A
Sbjct: 241 QQITGAVTNMERRSGNVLPPPLDDCTSNTSGKPTVKNSSSNSVGTARGLPPNGIPAKPMA 300

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKPDT 333
               AAWG + TNC P  GG   P G S PKPD+
Sbjct: 301 --PHAAWGLRATNCQPAAGG---PTGLSKPKPDS 329


>Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score =  556 bits (1434), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 260/334 (77%), Positives = 288/334 (86%), Gaps = 6/334 (1%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSDEGERTCPLCAEEMDLTDQQL+PCKCGY+ICVWCWHHIMDMAEKD+TEGRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPY 60

Query: 61  DKKKIVGMAATCERLVSEIHME-XXXXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLN 119
           DK+KIVGMAA CERLV+E+HME             DGRKQLS+VRVI+RNLVYIVGLPL+
Sbjct: 61  DKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLD 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQRREYF QYGKVLKVSMSRTAAGV+QQFPN+TCSVYITYSKEEEAIRCIQNVH
Sbjct: 121 LADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GF+LE RPLRACFGTTKYCHAWLRN PCSNPDC+YLHEIGSQEDSF+KDE++SAYTRS +
Sbjct: 181 GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHI 240

Query: 240 QQITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVA 299
           QQITG V N+ RRSGNVLPPP+DDCT+N+SGKP +K++SSN   T R  PPNGI  + +A
Sbjct: 241 QQITGAVTNMERRSGNVLPPPLDDCTSNTSGKPTVKNSSSNSVGTARGLPPNGIPAKPMA 300

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKPDT 333
               AAWG + TNC P  GG   P G S PKPD+
Sbjct: 301 --PHAAWGLRATNCQPAAGG---PTGLSKPKPDS 329


>Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score =  556 bits (1434), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 260/334 (77%), Positives = 288/334 (86%), Gaps = 6/334 (1%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           MSDEGERTCPLCAEEMDLTDQQL+PCKCGY+ICVWCWHHIMDMAEKD+TEGRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPY 60

Query: 61  DKKKIVGMAATCERLVSEIHME-XXXXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLN 119
           DK+KIVGMAA CERLV+E+HME             DGRKQLS+VRVI+RNLVYIVGLPL+
Sbjct: 61  DKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLD 120

Query: 120 LADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVH 179
           LADEDLLQRREYF QYGKVLKVSMSRTAAGV+QQFPN+TCSVYITYSKEEEAIRCIQNVH
Sbjct: 121 LADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVH 180

Query: 180 GFILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRV 239
           GF+LE RPLRACFGTTKYCHAWLRN PCSNPDC+YLHEIGSQEDSF+KDE++SAYTRS +
Sbjct: 181 GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHI 240

Query: 240 QQITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVA 299
           QQITG V N+ RRSGNVLPPP+DDCT+N+SGKP +K++SSN   T R  PPNGI  + +A
Sbjct: 241 QQITGAVTNMERRSGNVLPPPLDDCTSNTSGKPTVKNSSSNSVGTARGLPPNGIPAKPMA 300

Query: 300 LPASAAWGTQPTNCAPPVGGQSYPNGPSMPKPDT 333
               AAWG + TNC P  GG   P G S PKPD+
Sbjct: 301 --PHAAWGLRATNCQPAAGG---PTGLSKPKPDS 329


>Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
           putative | HC | chr1:28798997-28807271 | 20130731
          Length = 908

 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/307 (64%), Positives = 238/307 (77%), Gaps = 3/307 (0%)

Query: 1   MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY 60
           M D+G ++CP+C EEMDLTDQ LKPCKCGYEICVWCWHHIM+MA KD+TEGRCPACRSPY
Sbjct: 1   MGDKGGKSCPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPY 60

Query: 61  DKKKIVGMAATCERLVSEIHMEXXXXXXXXXXXXDGRKQLSSVRVIQRNLVYIVGLPLNL 120
           DK++IV MAA C RLV+E++              DGRK L+ VRVIQRNLVYI+GLPL+L
Sbjct: 61  DKERIVAMAANCRRLVAEMN-SKKKIPKLKPKSSDGRKHLTDVRVIQRNLVYIIGLPLHL 119

Query: 121 ADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHG 180
           ADEDLLQRREYF +YGKVLKVS+SRTA GVIQ   N+ C VYITYSKE EA+RCIQ+VH 
Sbjct: 120 ADEDLLQRREYFGRYGKVLKVSISRTATGVIQHSANNICCVYITYSKESEAVRCIQSVHF 179

Query: 181 FILEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEIGSQEDSFSKDEIISAYTRSRVQ 240
           F+LEGR LRACFGTTKYCHAWLRN PCSN DCLYLH+ G+ EDSF+KDE++ A+ RSRV 
Sbjct: 180 FVLEGRSLRACFGTTKYCHAWLRNVPCSNRDCLYLHDHGAHEDSFTKDELVLAFARSRVL 239

Query: 241 QITGHVNNLIRRSGNVLPPPIDDCTNNSSGKPILKSASSNCSSTVRDSPPNGIYGRNVAL 300
           QI G  NNL R SG+VLPPP DD  + SS   ++  + S+  + +++S  +     + AL
Sbjct: 240 QIIGATNNLNRPSGSVLPPPPDDPKHVSSATKVV--SKSSLDNQIKESCSSNGAANSTAL 297

Query: 301 PASAAWG 307
           PA+ +W 
Sbjct: 298 PAANSWA 304


>Medtr6g008950.1 | anti-virus transcriptional factor, putative | HC
           | chr6:2516081-2513329 | 20130731
          Length = 313

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 6/53 (11%)

Query: 9   CPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYD 61
           CP+C E++D+TD +  PC CG+ +C++C   I+      + +GRCP CR  YD
Sbjct: 240 CPICYEDLDVTDSEFLPCSCGFHLCLFCHKKIV------EADGRCPGCRKLYD 286