Miyakogusa Predicted Gene

Lj3g3v3087300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3087300.1 tr|I3SSH7|I3SSH7_LOTJA DNA-directed RNA
polymerase subunit OS=Lotus japonicus PE=3
SV=1,85.71,0.0000000000001,seg,NULL; ZF_TFIIS_2,Zinc finger,
TFIIS-type; no description,NULL; C2C2 Zinc finger,Zinc finger,
TFI,CUFF.45299.1
         (58 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g116750.1 | DNA-directed RNA polymerase subunit | LC | chr...    59   7e-10
Medtr5g030180.2 | DNA-directed RNA polymerase subunit | HC | chr...    59   7e-10
Medtr5g030180.4 | DNA-directed RNA polymerase subunit | HC | chr...    59   8e-10
Medtr5g030180.1 | DNA-directed RNA polymerase subunit | HC | chr...    59   8e-10
Medtr5g030180.3 | DNA-directed RNA polymerase subunit | HC | chr...    59   8e-10

>Medtr7g116750.1 | DNA-directed RNA polymerase subunit | LC |
           chr7:48211120-48208907 | 20130731
          Length = 117

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H +A+Y   QTRSADEPATIFY C+N+KC +QW+E
Sbjct: 77  CPNCRHPQASYHMEQTRSADEPATIFYKCMNQKCEHQWKE 116


>Medtr5g030180.2 | DNA-directed RNA polymerase subunit | HC |
           chr5:12700149-12698230 | 20130731
          Length = 128

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H +A+Y   QTRSADEPATIFY CLNEKC ++W+E
Sbjct: 89  CPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 128


>Medtr5g030180.4 | DNA-directed RNA polymerase subunit | HC |
           chr5:12699961-12698230 | 20130731
          Length = 115

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H +A+Y   QTRSADEPATIFY CLNEKC ++W+E
Sbjct: 76  CPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 115


>Medtr5g030180.1 | DNA-directed RNA polymerase subunit | HC |
           chr5:12699961-12698230 | 20130731
          Length = 115

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H +A+Y   QTRSADEPATIFY CLNEKC ++W+E
Sbjct: 76  CPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 115


>Medtr5g030180.3 | DNA-directed RNA polymerase subunit | HC |
           chr5:12699961-12698230 | 20130731
          Length = 115

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 19  CQKCSHDKAAYTEFQTRSADEPATIFYLCLNEKCRYQWRE 58
           C  C H +A+Y   QTRSADEPATIFY CLNEKC ++W+E
Sbjct: 76  CPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 115