Miyakogusa Predicted Gene

Lj3g3v3085860.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3085860.3 Non Characterized Hit- tr|K3Y7Q4|K3Y7Q4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009962,62.86,7e-19,seg,NULL; PREDICTED PROTEIN (FRAGMENT),NULL;
MEMBRANE ASSOCIATED RING FINGER,NULL,CUFF.45283.3
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g059540.1 | RING/U-box protein | HC | chr4:21933621-219287...   215   9e-57
Medtr4g459440.1 | RING/U-box protein, putative | HC | chr4:21874...   174   3e-44
Medtr2g094130.1 | RING/U-box protein | HC | chr2:40144316-401482...   168   1e-42
Medtr2g094130.2 | RING/U-box protein | HC | chr2:40144316-401482...   162   1e-40
Medtr1g064710.1 | RING/U-box protein | HC | chr1:28480942-284866...   156   5e-39
Medtr3g081490.1 | zinc finger protein | HC | chr3:36898911-36894...   130   4e-31
Medtr4g059540.2 | RING/U-box protein | HC | chr4:21933621-219287...   119   8e-28
Medtr1g064710.4 | RING/U-box protein | HC | chr1:28480942-284866...    93   7e-20
Medtr2g020520.4 | zinc finger protein | HC | chr2:6841935-683628...    88   2e-18
Medtr2g020520.1 | zinc finger protein | HC | chr2:6842371-683628...    84   3e-17
Medtr2g020520.2 | zinc finger protein | HC | chr2:6842446-683628...    84   4e-17
Medtr2g020520.3 | zinc finger protein | HC | chr2:6842068-683628...    84   4e-17
Medtr1g064710.7 | RING/U-box protein | HC | chr1:28480942-284866...    63   9e-11
Medtr3g081490.4 | zinc finger protein | HC | chr3:36898911-36894...    60   8e-10
Medtr3g081490.2 | zinc finger protein | HC | chr3:36898911-36894...    60   9e-10
Medtr3g081490.3 | zinc finger protein | HC | chr3:36898911-36894...    60   9e-10
Medtr7g075740.1 | zinc finger protein | HC | chr7:28411195-28413...    47   7e-06

>Medtr4g059540.1 | RING/U-box protein | HC | chr4:21933621-21928732
           | 20130731
          Length = 521

 Score =  215 bits (548), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 110/151 (72%), Positives = 115/151 (76%), Gaps = 14/151 (9%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLV+KMGTGAIAISLPFSCVLG          V SRFIWIYAS QFALVV
Sbjct: 369 MLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVMSRFIWIYASFQFALVV 428

Query: 61  LFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHG--- 117
           LFAHIFYS+VHVQAVLSILLATFAGFGVVM GSS+LVE FRWRRRWQA  EQQ  HG   
Sbjct: 429 LFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSMLVEFFRWRRRWQASLEQQ--HGPLP 486

Query: 118 -------PQTANTPRSGSV--TQPVVQNQQN 139
                  P+T  TPRSG     Q VVQNQQ+
Sbjct: 487 MTQAGQQPRTVTTPRSGQSNHNQSVVQNQQD 517


>Medtr4g459440.1 | RING/U-box protein, putative | HC |
           chr4:21874716-21873646 | 20130731
          Length = 138

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 101/136 (74%), Gaps = 14/136 (10%)

Query: 16  MGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAV 75
           MGTGAIAISLPFSCVLG          V SRFIWIYAS QFALVVLFAHIFYS+VHVQAV
Sbjct: 1   MGTGAIAISLPFSCVLGLLSSMTSSTMVMSRFIWIYASFQFALVVLFAHIFYSLVHVQAV 60

Query: 76  LSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHG----------PQTANTPR 125
           LSILLATFAGFGVVM GSS+LVE FRWRRRWQA  EQQ  HG          P+T  TPR
Sbjct: 61  LSILLATFAGFGVVMSGSSMLVEFFRWRRRWQASLEQQ--HGPLPMTQAGQQPRTVTTPR 118

Query: 126 SG--SVTQPVVQNQQN 139
           SG  +  Q VVQNQQ+
Sbjct: 119 SGQSNHNQSVVQNQQD 134


>Medtr2g094130.1 | RING/U-box protein | HC | chr2:40144316-40148220
           | 20130731
          Length = 498

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 105/152 (69%), Gaps = 13/152 (8%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLV KMGT AI ISLPFSCVLG          V+S+FIW+YAS QF LVV
Sbjct: 344 MLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRSKFIWLYASAQFLLVV 403

Query: 61  LFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHG--- 117
           LFAH+FY +V  QAVL+ILLA+FAGFGV+M GSS++ E+ +WRRRW A SEQQ+      
Sbjct: 404 LFAHVFYPLVGKQAVLAILLASFAGFGVMMSGSSVIAEILKWRRRWLAYSEQQRRDSQVM 463

Query: 118 ------PQTANTPRSG----SVTQPVVQNQQN 139
                 PQ   TP+S     + T   +QNQQN
Sbjct: 464 TQEGLYPQGVITPQSSLPNHNQTTVQLQNQQN 495


>Medtr2g094130.2 | RING/U-box protein | HC | chr2:40144316-40148220
           | 20130731
          Length = 503

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 105/157 (66%), Gaps = 18/157 (11%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLV KMGT AI ISLPFSCVLG          V+S+FIW+YAS QF LVV
Sbjct: 344 MLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRSKFIWLYASAQFLLVV 403

Query: 61  LFAHIFYSV-----VHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQL 115
           LFAH+FY +     V  QAVL+ILLA+FAGFGV+M GSS++ E+ +WRRRW A SEQQ+ 
Sbjct: 404 LFAHVFYPLFGNLQVGKQAVLAILLASFAGFGVMMSGSSVIAEILKWRRRWLAYSEQQRR 463

Query: 116 HG---------PQTANTPRSG----SVTQPVVQNQQN 139
                      PQ   TP+S     + T   +QNQQN
Sbjct: 464 DSQVMTQEGLYPQGVITPQSSLPNHNQTTVQLQNQQN 500


>Medtr1g064710.1 | RING/U-box protein | HC | chr1:28480942-28486635
           | 20130731
          Length = 504

 Score =  156 bits (395), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/135 (54%), Positives = 92/135 (68%), Gaps = 1/135 (0%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLVS MG+ AIA+SLPFSC+LG          V+   +WIY ++QF LVV
Sbjct: 353 MLAYFCFLEQLLVSDMGSSAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTMQFCLVV 412

Query: 61  LFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHGPQT 120
           L  H+F+ +  + AVL+ILLATFAGFGVVMCG+ IL+E+ +WRRRW A   QQ + G + 
Sbjct: 413 LCGHLFFKLTKMGAVLAILLATFAGFGVVMCGTCILIEILKWRRRWLAQLNQQNV-GSED 471

Query: 121 ANTPRSGSVTQPVVQ 135
           A  P   S     VQ
Sbjct: 472 AVLPDQSSAATHQVQ 486


>Medtr3g081490.1 | zinc finger protein | HC | chr3:36898911-36894526
           | 20130731
          Length = 476

 Score =  130 bits (327), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 75/107 (70%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLE+LLVS +G  A+AISLPFSC+LG          V   +IW YA  QFA V+
Sbjct: 337 MLAYFCFLEELLVSDLGPRALAISLPFSCILGLLSSIIASTMVSRSYIWAYACFQFAFVI 396

Query: 61  LFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQ 107
           LFAHIFYS+++V A+ S+LLATF GFG+ +  +S+L+E  RW    Q
Sbjct: 397 LFAHIFYSILNVSAIFSVLLATFTGFGIAISMNSLLMEYIRWETNRQ 443


>Medtr4g059540.2 | RING/U-box protein | HC | chr4:21933621-21928750
           | 20130731
          Length = 468

 Score =  119 bits (298), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/70 (80%), Positives = 58/70 (82%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLV+KMGTGAIAISLPFSCVLG          V SRFIWIYAS QFALVV
Sbjct: 369 MLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVMSRFIWIYASFQFALVV 428

Query: 61  LFAHIFYSVV 70
           LFAHIFYS+V
Sbjct: 429 LFAHIFYSLV 438


>Medtr1g064710.4 | RING/U-box protein | HC | chr1:28480942-28486635
           | 20130731
          Length = 432

 Score = 93.2 bits (230), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVV 60
           MLAYFCFLEQLLVS MG+ AIA+SLPFSC+LG          V+   +WIY ++QF LVV
Sbjct: 353 MLAYFCFLEQLLVSDMGSSAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTMQFCLVV 412

Query: 61  LFAHIFYSVV 70
           L  H+F+ +V
Sbjct: 413 LCGHLFFKLV 422


>Medtr2g020520.4 | zinc finger protein | HC | chr2:6841935-6836281 |
           20130731
          Length = 423

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 61/102 (59%)

Query: 2   LAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVL 61
           + YF FLEQLL+  + T AI +S PFS  LG              +IW YA+++FALV +
Sbjct: 312 ICYFFFLEQLLLPDLKTQAIIMSAPFSFTLGLLGSVFAIVLAIKEYIWTYAALEFALVAI 371

Query: 62  FAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWR 103
             H+FY+++H+  + SILL+T  GFG+ M  + I ++   WR
Sbjct: 372 TVHLFYTMLHLAPIYSILLSTVFGFGIAMGINYIYIQYVNWR 413


>Medtr2g020520.1 | zinc finger protein | HC | chr2:6842371-6836281 |
           20130731
          Length = 424

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%)

Query: 2   LAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVL 61
           + YF FLEQLL+  + T AI +S PFS  LG              +IW YA+++FALV +
Sbjct: 313 ICYFFFLEQLLLPDLKTQAIIMSAPFSFTLGLLGSVFAIVLAIKEYIWTYAALEFALVAI 372

Query: 62  FAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWR 103
             H+FY+++H+  + SILL+T  GFG+ M  + I ++   WR
Sbjct: 373 TVHLFYTMLHLAPIYSILLSTVFGFGIAMGINYIYIQYVNWR 414


>Medtr2g020520.2 | zinc finger protein | HC | chr2:6842446-6836281 |
           20130731
          Length = 315

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%)

Query: 2   LAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVL 61
           + YF FLEQLL+  + T AI +S PFS  LG              +IW YA+++FALV +
Sbjct: 204 ICYFFFLEQLLLPDLKTQAIIMSAPFSFTLGLLGSVFAIVLAIKEYIWTYAALEFALVAI 263

Query: 62  FAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWR 103
             H+FY+++H+  + SILL+T  GFG+ M  + I ++   WR
Sbjct: 264 TVHLFYTMLHLAPIYSILLSTVFGFGIAMGINYIYIQYVNWR 305


>Medtr2g020520.3 | zinc finger protein | HC | chr2:6842068-6836281 |
           20130731
          Length = 315

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%)

Query: 2   LAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVL 61
           + YF FLEQLL+  + T AI +S PFS  LG              +IW YA+++FALV +
Sbjct: 204 ICYFFFLEQLLLPDLKTQAIIMSAPFSFTLGLLGSVFAIVLAIKEYIWTYAALEFALVAI 263

Query: 62  FAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWR 103
             H+FY+++H+  + SILL+T  GFG+ M  + I ++   WR
Sbjct: 264 TVHLFYTMLHLAPIYSILLSTVFGFGIAMGINYIYIQYVNWR 305


>Medtr1g064710.7 | RING/U-box protein | HC | chr1:28480942-28486635
           | 20130731
          Length = 396

 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 30/32 (93%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLG 32
           MLAYFCFLEQLLVS MG+ AIA+SLPFSC+LG
Sbjct: 353 MLAYFCFLEQLLVSDMGSSAIAMSLPFSCILG 384


>Medtr3g081490.4 | zinc finger protein | HC | chr3:36898911-36894526
           | 20130731
          Length = 380

 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLG 32
           MLAYFCFLE+LLVS +G  A+AISLPFSC+LG
Sbjct: 337 MLAYFCFLEELLVSDLGPRALAISLPFSCILG 368


>Medtr3g081490.2 | zinc finger protein | HC | chr3:36898911-36894532
           | 20130731
          Length = 387

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLG 32
           MLAYFCFLE+LLVS +G  A+AISLPFSC+LG
Sbjct: 337 MLAYFCFLEELLVSDLGPRALAISLPFSCILG 368


>Medtr3g081490.3 | zinc finger protein | HC | chr3:36898911-36894532
           | 20130731
          Length = 387

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 1   MLAYFCFLEQLLVSKMGTGAIAISLPFSCVLG 32
           MLAYFCFLE+LLVS +G  A+AISLPFSC+LG
Sbjct: 337 MLAYFCFLEELLVSDLGPRALAISLPFSCILG 368


>Medtr7g075740.1 | zinc finger protein | HC | chr7:28411195-28413523
           | 20130731
          Length = 240

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%)

Query: 2   LAYFCFLEQLLVSKMGTGAIAISLPFSCVLGXXXXXXXXXXVKSRFIWIYASVQFALVVL 61
           L YF F+  LL   + T  I I+   S  L               ++W+YA ++F LV  
Sbjct: 129 LWYFHFIVDLLYRDLKTRGIIIAAAVSFTLSLLASVFAFFLAIREYMWLYALLEFGLVDA 188

Query: 62  FAHIFYSVVHVQAVLSILLATFAGFGVVM 90
              +FY+++H+  + SI L++  GFG+ M
Sbjct: 189 TFLLFYTLLHLAPIYSIPLSSVVGFGIAM 217