Miyakogusa Predicted Gene

Lj3g3v3085850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3085850.1 Non Characterized Hit- tr|A5BSH1|A5BSH1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,71.43,0.0000007,SUA5,NULL; no description,DHBP synthase RibB-like
alpha/beta domain; YrdC/RibB,DHBP synthase RibB-li,CUFF.45278.1
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g059530.1 | telomere recombination domain protein | HC | c...   387   e-108
Medtr4g459430.1 | telomere recombination domain protein | HC | c...   387   e-108
Medtr7g034590.3 | DHBP synthase RibB-like alpha/beta domain prot...    56   3e-08
Medtr7g034590.1 | DHBP synthase RibB-like alpha/beta domain prot...    49   4e-06

>Medtr4g059530.1 | telomere recombination domain protein | HC |
           chr4:21926816-21922843 | 20130731
          Length = 349

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/208 (90%), Positives = 196/208 (94%)

Query: 50  WRMDSGDLGLEFKAGVVHPARDDYAAEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNR 109
           W M+  DLGL+ K GVVHPA D YAAEAVE LKAGKVIAVPTDTLYGFACDACSLEAVNR
Sbjct: 3   WSMERCDLGLDVKTGVVHPATDAYAAEAVETLKAGKVIAVPTDTLYGFACDACSLEAVNR 62

Query: 110 IYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLKRGESSILEQS 169
           IYEIKGRKHTSPLAICVGDVSDINRFA+TDHLPHGLLDSLLPGPVTVVL RGESS LE+S
Sbjct: 63  IYEIKGRKHTSPLAICVGDVSDINRFALTDHLPHGLLDSLLPGPVTVVLSRGESSALERS 122

Query: 170 LNPGFDSIGVRVPDSNFIRVIARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCAFVFD 229
           LNPGFDSIGVRVPD NFIR+IARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCA V+D
Sbjct: 123 LNPGFDSIGVRVPDCNFIRLIARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCASVYD 182

Query: 230 GGLLPSGRAGSTVVDLTTPHKYKILRPG 257
           GGLLPSGRAGSTVVDL+TP+KYKILRPG
Sbjct: 183 GGLLPSGRAGSTVVDLSTPYKYKILRPG 210


>Medtr4g459430.1 | telomere recombination domain protein | HC |
           chr4:21870467-21866982 | 20130731
          Length = 349

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/208 (90%), Positives = 196/208 (94%)

Query: 50  WRMDSGDLGLEFKAGVVHPARDDYAAEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNR 109
           W M+  DLGL+ K GVVHPA D YAAEAVE LKAGKVIAVPTDTLYGFACDACSLEAVNR
Sbjct: 3   WSMERCDLGLDVKTGVVHPATDAYAAEAVETLKAGKVIAVPTDTLYGFACDACSLEAVNR 62

Query: 110 IYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLKRGESSILEQS 169
           IYEIKGRKHTSPLAICVGDVSDINRFA+TDHLPHGLLDSLLPGPVTVVL RGESS LE+S
Sbjct: 63  IYEIKGRKHTSPLAICVGDVSDINRFALTDHLPHGLLDSLLPGPVTVVLSRGESSALERS 122

Query: 170 LNPGFDSIGVRVPDSNFIRVIARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCAFVFD 229
           LNPGFDSIGVRVPD NFIR+IARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCA V+D
Sbjct: 123 LNPGFDSIGVRVPDCNFIRLIARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCASVYD 182

Query: 230 GGLLPSGRAGSTVVDLTTPHKYKILRPG 257
           GGLLPSGRAGSTVVDL+TP+KYKILRPG
Sbjct: 183 GGLLPSGRAGSTVVDLSTPYKYKILRPG 210


>Medtr7g034590.3 | DHBP synthase RibB-like alpha/beta domain
           protein, putative | HC | chr7:13106077-13103918 |
           20130731
          Length = 171

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 63  AGVVHPARDDYAAEA------VEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGR 116
            G+++   D + +++      V  LK G V  +PTDTLY  ACD  +  A+ R+  IK  
Sbjct: 59  GGLIYIEADPFGSDSWKLEPVVNLLKQGAVGVIPTDTLYAIACDLTNNSAIERLRRIKNI 118

Query: 117 KHTSPLAICVGDVSDINR----FAVTDHLPHGLL----DSLLPGPVTVVLK 159
             + PL+I     SDI++    F   D   H  L       LPGPV+++LK
Sbjct: 119 DGSKPLSILCHSFSDIDKYTSGFPCGDGQGHANLFKAVKHCLPGPVSILLK 169


>Medtr7g034590.1 | DHBP synthase RibB-like alpha/beta domain
           protein, putative | HC | chr7:13106077-13098550 |
           20130731
          Length = 185

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 63  AGVVHPARDDYAAEA------VEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGR 116
            G+++   D + +++      V  LK G V  +PTDTLY  ACD  +  A+ R+  IK  
Sbjct: 59  GGLIYIEADPFGSDSWKLEPVVNLLKQGAVGVIPTDTLYAIACDLTNNSAIERLRRIKNI 118

Query: 117 KHTSPLAICVGDVSDINRFA 136
             + PL+I     SDI+++ 
Sbjct: 119 DGSKPLSILCHSFSDIDKYT 138