Miyakogusa Predicted Gene

Lj3g3v3085650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3085650.1 Non Characterized Hit- tr|C6TJ54|C6TJ54_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7398
PE=,53.33,0.00000000000004,seg,NULL,CUFF.45261.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g058990.1 | double-stranded RNA-binding motif protein | HC...    62   3e-10
Medtr2g094490.1 | double-stranded RNA-binding motif protein | HC...    56   2e-08

>Medtr4g058990.1 | double-stranded RNA-binding motif protein | HC |
           chr4:21760281-21755984 | 20130731
          Length = 473

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)

Query: 53  KQTEFPSSRSSTLCSHTTMRLPCQGISPPVTIWTAVPVFSPPPATMFHHQEMXXXXXXXX 112
           ++ +FP++ ++       MR  CQG++PPVT+  A+PVFSPPPA +   Q M        
Sbjct: 266 RRPKFPAAGAAPYVPIRHMRSSCQGVAPPVTVRNAIPVFSPPPAAV-SPQVMRPLPVRVA 324

Query: 113 XXXSTRQAVPVY-TAPPIRRYVPAPICKG 140
              + RQ VPVY +APP+R+  P PI K 
Sbjct: 325 PPINIRQVVPVYASAPPVRKDEPIPISKN 353


>Medtr2g094490.1 | double-stranded RNA-binding motif protein | HC |
           chr2:40288473-40292848 | 20130731
          Length = 408

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 57  FPSSRSSTLCSHTTMRLPCQGISPPVTIWTAVPVFS----PPPATMFHHQEMXXXXXXXX 112
           FP++ +        MR PC GI+P V++ T +PVFS    PPP ++  HQ +        
Sbjct: 282 FPAAGAPPYVPIRQMR-PCHGIAPAVSVRTVIPVFSAPPLPPPTSV--HQIIRAPPVRIA 338

Query: 113 XXXSTRQAVPVYTAPPIRRYVPAPICK 139
              S RQAVPV+ APP+R+  PAPI K
Sbjct: 339 PPVSIRQAVPVFAAPPLRKDEPAPIQK 365